Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPOKI154_RS02485 Genome accession   NZ_CP006823
Coordinates   507831..508115 (-) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori oki154     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502831..513115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI154_RS02460 (HPOKI154_02575) - 503488..504604 (-) 1117 Protein_483 VirB8/TrbF family protein -
  HPOKI154_RS02465 (HPOKI154_02580) - 504597..504731 (-) 135 WP_000738749.1 hypothetical protein -
  HPOKI154_RS02470 (HPOKI154_02585) - 504728..507310 (-) 2583 WP_025222676.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPOKI154_RS02475 (HPOKI154_02590) - 507310..507546 (-) 237 WP_001183709.1 hypothetical protein -
  HPOKI154_RS02480 (HPOKI154_02595) comB3 507557..507820 (-) 264 WP_001177715.1 hypothetical protein Machinery gene
  HPOKI154_RS02485 (HPOKI154_02600) comB2 507831..508115 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HPOKI154_RS02490 (HPOKI154_02605) - 508112..508591 (-) 480 WP_025222677.1 hypothetical protein -
  HPOKI154_RS02495 (HPOKI154_02610) - 508695..509483 (-) 789 WP_025222678.1 hypothetical protein -
  HPOKI154_RS02500 - 509538..510308 (+) 771 Protein_491 DNA cytosine methyltransferase -
  HPOKI154_RS02505 - 510301..510567 (+) 267 Protein_492 restriction endonuclease -
  HPOKI154_RS02510 - 510768..511253 (+) 486 Protein_493 restriction endonuclease -
  HPOKI154_RS02515 (HPOKI154_02630) - 511490..512434 (-) 945 WP_025366792.1 catalase family peroxidase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=114183 HPOKI154_RS02485 WP_000736106.1 507831..508115(-) (comB2) [Helicobacter pylori oki154]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=114183 HPOKI154_RS02485 WP_000736106.1 507831..508115(-) (comB2) [Helicobacter pylori oki154]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0F3N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment