Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQN27_RS07160 Genome accession   NZ_LS483439
Coordinates   965568..966446 (-) Length   292 a.a.
NCBI ID   WP_308704426.1    Uniprot ID   -
Organism   Acholeplasma laidlawii strain NCTC10116     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 953644..975713 965568..966446 within 0


Gene organization within MGE regions


Location: 953644..975713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN27_RS04580 (NCTC10116_00935) - 953644..954201 (-) 558 WP_012242872.1 hypothetical protein -
  DQN27_RS04585 (NCTC10116_00936) - 954559..955002 (-) 444 WP_012242873.1 hypothetical protein -
  DQN27_RS04590 (NCTC10116_00937) - 955045..957000 (-) 1956 WP_012242874.1 InlB B-repeat-containing protein -
  DQN27_RS04595 (NCTC10116_00938) - 957075..958367 (-) 1293 WP_012242875.1 SPFH domain-containing protein -
  DQN27_RS04600 (NCTC10116_00939) - 958406..959179 (-) 774 WP_012242876.1 zinc-ribbon domain-containing protein -
  DQN27_RS04605 (NCTC10116_00940) - 959184..959411 (-) 228 WP_012242877.1 helix-turn-helix domain-containing protein -
  DQN27_RS04610 (NCTC10116_00941) - 959678..960202 (-) 525 WP_049751954.1 DUF1643 domain-containing protein -
  DQN27_RS04615 (NCTC10116_00942) - 960315..960728 (-) 414 WP_012242879.1 hypothetical protein -
  DQN27_RS04620 (NCTC10116_00943) - 960756..961040 (-) 285 WP_012242880.1 HNH endonuclease -
  DQN27_RS07215 - 961006..961311 (-) 306 WP_081423662.1 methionine adenosyltransferase domain-containing protein -
  DQN27_RS07190 - 961733..961858 (+) 126 WP_269460506.1 hypothetical protein -
  DQN27_RS07220 - 962152..962334 (-) 183 WP_049751955.1 IS3 family transposase -
  DQN27_RS04645 (NCTC10116_00945) - 962335..962937 (-) 603 WP_111724347.1 IS3 family transposase -
  DQN27_RS04650 (NCTC10116_00946) - 963042..963359 (-) 318 WP_041634117.1 transposase -
  DQN27_RS04660 (NCTC10116_00948) - 963760..965571 (-) 1812 WP_012242883.1 ABC transporter ATP-binding protein -
  DQN27_RS07160 (NCTC10116_00949) rcrP 965568..966446 (-) 879 WP_308704426.1 ABC transporter ATP-binding protein Regulator
  DQN27_RS07165 - 966459..967319 (-) 861 Protein_911 ABC transporter permease -
  DQN27_RS04675 (NCTC10116_00951) - 967396..968016 (-) 621 WP_012242884.1 tRNA (adenine(22)-N(1))-methyltransferase -
  DQN27_RS04680 (NCTC10116_00952) rpoD 968013..969272 (-) 1260 WP_111724348.1 RNA polymerase sigma factor RpoD -
  DQN27_RS04685 (NCTC10116_00953) dnaG 969269..970996 (-) 1728 WP_012242886.1 DNA primase -
  DQN27_RS04690 (NCTC10116_00954) - 971022..972392 (-) 1371 WP_012242887.1 glycine--tRNA ligase -
  DQN27_RS04695 (NCTC10116_00955) recO 972405..973052 (-) 648 WP_012242888.1 DNA repair protein RecO -
  DQN27_RS04700 (NCTC10116_00956) era 973055..973942 (-) 888 WP_012242889.1 GTPase Era -
  DQN27_RS04705 (NCTC10116_00957) cdd 973942..974334 (-) 393 WP_012242890.1 cytidine deaminase -
  DQN27_RS04710 (NCTC10116_00958) ybeY 974357..974770 (-) 414 WP_012242891.1 rRNA maturation RNase YbeY -
  DQN27_RS04715 (NCTC10116_00959) - 974760..975713 (-) 954 WP_012242892.1 PhoH family protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32299.97 Da        Isoelectric Point: 5.2109

>NTDB_id=1141579 DQN27_RS07160 WP_308704426.1 965568..966446(-) (rcrP) [Acholeplasma laidlawii strain NCTC10116]
MNFMFITMILTMIPRAAISARRIMDVIDADVLIKDPVHPESIHDVMGKVEFENVSFQYPGADEPVLSHISLTANPGEVTA
FIGSTGSGKSTLINLIPRFYDPTEGRILLDGKDIKTFNQNEFLKYIGYVPQKGNLFKGTIASNIAFGQEEINMDVVEKSA
EIAQASNFIDQMDGKYDAPITQGGTNVSGGQRQRLSIARALAKEPKIYIFDDSFSALDYKTDINLRNALKQHVDATIIIV
AQRINSIKNADKIVVLDKGKIVGMGSHEELIKTSKVYLEIAESQLSQEELSR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1141579 DQN27_RS07160 WP_308704426.1 965568..966446(-) (rcrP) [Acholeplasma laidlawii strain NCTC10116]
ATGAACTTTATGTTTATTACAATGATTTTAACAATGATTCCACGTGCTGCAATATCAGCAAGACGTATCATGGATGTGAT
TGATGCTGATGTATTAATCAAAGATCCAGTTCACCCAGAATCCATTCACGATGTCATGGGTAAAGTTGAATTTGAAAACG
TGAGTTTCCAATATCCTGGAGCTGATGAACCAGTATTAAGTCACATCTCACTTACTGCAAATCCAGGTGAAGTCACTGCG
TTTATTGGTTCAACAGGTAGTGGTAAATCAACCTTAATCAACTTAATTCCTAGATTTTATGATCCAACTGAAGGACGTAT
TTTATTAGATGGTAAAGATATAAAGACCTTCAATCAAAATGAATTCTTAAAGTATATTGGTTATGTACCTCAAAAGGGTA
ATTTATTTAAAGGTACCATAGCATCAAATATTGCTTTTGGTCAAGAAGAAATCAATATGGATGTTGTTGAAAAATCTGCT
GAAATTGCTCAAGCATCCAATTTTATTGATCAAATGGATGGTAAATATGATGCACCAATTACTCAAGGTGGAACCAATGT
TAGTGGTGGGCAACGCCAAAGGTTGTCGATTGCTAGAGCACTAGCAAAAGAGCCCAAAATTTATATATTTGATGATTCTT
TTTCTGCACTTGATTATAAAACAGACATTAATTTAAGAAATGCACTTAAACAACATGTAGATGCAACAATTATTATTGTT
GCTCAACGTATTAATAGTATTAAAAATGCAGACAAGATTGTAGTACTTGATAAAGGTAAAATAGTTGGCATGGGAAGTCA
TGAGGAGCTAATTAAGACCTCCAAAGTATATCTTGAAATAGCAGAATCTCAATTAAGTCAGGAGGAGCTTTCACGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(66-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.342

100

0.503

Multiple sequence alignment