Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPOKI112_RS00095 Genome accession   NZ_CP006821
Coordinates   13862..14125 (+) Length   87 a.a.
NCBI ID   WP_000584964.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8862..19125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS00070 (HPOKI112_00075) groES 9147..9503 (-) 357 WP_000671953.1 co-chaperone GroES -
  HPOKI112_RS00075 (HPOKI112_00085) dnaG 9789..11468 (+) 1680 WP_025309522.1 DNA primase -
  HPOKI112_RS00080 (HPOKI112_00090) - 11465..12517 (+) 1053 WP_025309523.1 MnmA/TRMU family protein -
  HPOKI112_RS00085 (HPOKI112_00095) - 12608..13435 (+) 828 WP_025275437.1 DUF5718 family protein -
  HPOKI112_RS00090 (HPOKI112_00100) comB2 13581..13862 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HPOKI112_RS00095 (HPOKI112_00105) comB3 13862..14125 (+) 264 WP_000584964.1 hypothetical protein Machinery gene
  HPOKI112_RS00100 (HPOKI112_00110) comB4 14127..16490 (+) 2364 WP_025275439.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPOKI112_RS00105 (HPOKI112_00115) - 16792..18132 (+) 1341 WP_025276538.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.13 Da        Isoelectric Point: 9.5290

>NTDB_id=114138 HPOKI112_RS00095 WP_000584964.1 13862..14125(+) (comB3) [Helicobacter pylori oki112]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=114138 HPOKI112_RS00095 WP_000584964.1 13862..14125(+) (comB3) [Helicobacter pylori oki112]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment