Detailed information NTG1140547

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQN21_RS02225
• Genome accession: NZ_LS483409
• Coordinates: 392228..393157 (+)
• Length: 309 a.a.
• NCBI ID: WP_077496208.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus strain NCTC13773
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 387228..398157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN21_RS02205 (NCTC13773_00432)	-	387448..389103 (+)	1656	WP_077496206.1	peptide ABC transporter substrate-binding protein	-
DQN21_RS02210 (NCTC13773_00433)	-	389214..390128 (+)	915	WP_009853404.1	ABC transporter permease	-
DQN21_RS02215 (NCTC13773_00434)	-	390139..391170 (+)	1032	WP_009853405.1	ABC transporter permease	-
DQN21_RS02220 (NCTC13773_00435)	oppD	391182..392228 (+)	1047	WP_009853406.1	ABC transporter ATP-binding protein	Regulator
DQN21_RS02225 (NCTC13773_00436)	amiF	392228..393157 (+)	930	WP_077496208.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 309 a.a.
• Molecular weight: 35023.76 Da
• Isoelectric Point: 5.4462

>NTDB_id=1140547 DQN21_RS02225 WP_077496208.1 392228..393157(+) (amiF) [Streptococcus gallolyticus strain NCTC13773]
MTENRKKLVELKNVSLTFNEGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTIGRAILKLYDINKGEIDFDGETISHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDQKVQDLLALVGLNKDHSTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLTAIPEPDPESERNRIHEEYDPSAELDGQPREMREITPGHFVLCTEAEAEAYKQEL

Nucleotide

• Length: 930 bp

>NTDB_id=1140547 DQN21_RS02225 WP_077496208.1 392228..393157(+) (amiF) [Streptococcus gallolyticus strain NCTC13773]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCATTGACTTTTAATGAAGGTAAAAAGAACGAAGTAAA
AGCTATTGATAATATCAGTTTTGATATTTACGAAGGTGAAGTTTTCGGTCTTGTTGGAGAATCAGGTTCTGGTAAGACAA
CCATTGGTCGTGCTATTTTGAAATTGTACGACATTAATAAAGGTGAAATTGATTTTGATGGCGAAACTATCTCTCACCTT
AAAGGAAAAGAATTGCACGAATTCCGTAAAAATGCTCAAATGATTTTCCAAGACCCACAAGCTAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCGGAAGGACTTGACATCCATAAATTAGTTAACAGTAAAGAAGAACGTGACCAAAAAGTTC
AAGATTTACTTGCTTTAGTTGGACTTAACAAAGACCATTCAACACGCTATCCACATGAATTTTCAGGTGGACAACGTCAA
CGTATTGGTATCGCTCGTGCTCTTGCTGTTGAACCAAAGTTCATCATTGCCGATGAACCAATTTCAGCCCTTGACGTGTC
AATCCAAGCTCAAGTTGTTAACCTTATGCAAAAACTTCAAAGAGAACAGGGGTTAACATATCTCTTTATCGCTCACGATT
TGTCAATGGTTAAATACATCTCAGATCGTATTGGGGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGATGAT
GTCTATAATCATCCAATTCACCCATATACTAAGAGCTTATTGACTGCAATTCCAGAACCAGACCCAGAATCTGAAAGAAA
TCGTATCCATGAAGAATACGATCCAAGTGCAGAACTAGATGGCCAACCACGTGAAATGCGTGAAATTACACCTGGCCACT
TTGTTCTTTGTACAGAAGCAGAAGCAGAAGCTTATAAACAAGAATTATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.754	98.706	0.54
amiF	Streptococcus salivarius strain HSISS4	54.754	98.706	0.54
amiF	Streptococcus thermophilus LMG 18311	54.426	98.706	0.537