Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DQN23_RS03270 Genome accession   NZ_LS483403
Coordinates   613226..614092 (+) Length   288 a.a.
NCBI ID   WP_020916496.1    Uniprot ID   A0AB33AL16
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 608226..619092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS03240 (NCTC13774_00666) - 608450..609325 (+) 876 WP_020916491.1 F0F1 ATP synthase subunit gamma -
  DQN23_RS03245 (NCTC13774_00667) atpD 609393..610799 (+) 1407 WP_020916492.1 F0F1 ATP synthase subunit beta -
  DQN23_RS03250 (NCTC13774_00668) - 610812..611228 (+) 417 WP_020916493.1 F0F1 ATP synthase subunit epsilon -
  DQN23_RS03255 (NCTC13774_00669) - 611357..611593 (+) 237 WP_111698364.1 DUF1146 family protein -
  DQN23_RS03260 (NCTC13774_00670) murA 611655..612929 (+) 1275 WP_043895004.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQN23_RS03265 (NCTC13774_00671) - 612933..613121 (+) 189 WP_020916495.1 DNA-directed RNA polymerase subunit beta -
  DQN23_RS03270 (NCTC13774_00672) endA 613226..614092 (+) 867 WP_020916496.1 DNA/RNA non-specific endonuclease Machinery gene
  DQN23_RS03275 (NCTC13774_00673) pheS 614384..615427 (+) 1044 WP_111712701.1 phenylalanine--tRNA ligase subunit alpha -
  DQN23_RS03280 (NCTC13774_00674) - 615460..615984 (+) 525 WP_058833150.1 GNAT family N-acetyltransferase -
  DQN23_RS03285 (NCTC13774_00675) pheT 616054..618459 (+) 2406 WP_111712702.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30987.32 Da        Isoelectric Point: 9.3122

>NTDB_id=1140348 DQN23_RS03270 WP_020916496.1 613226..614092(+) (endA) [Streptococcus lutetiensis strain NCTC13774]
MVKKSKLSKQAKSFIFLLVLLLSIGAGWLTTSDSSNPVNQVISLITGESSVKIVSNQSSANQATPSQELADSVLTDSVKA
QLGSNLEWNGAGAYLVNGNKTDLNARVASKPYANNKTKIVQGQTVPTVANALLSKLTRQYRSREETGNGSTSWTPAGWHQ
AQNISGRYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEASSEDSTGQNYYEGQVRRALDQNKRVRYRVTL
IYDGDNILASGTHLEAKSSDGSLEFNVFIPNVQSGLSFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1140348 DQN23_RS03270 WP_020916496.1 613226..614092(+) (endA) [Streptococcus lutetiensis strain NCTC13774]
ATGGTAAAGAAATCAAAACTGTCTAAACAGGCAAAATCATTTATTTTTTTATTAGTTTTATTGCTTAGTATTGGTGCGGG
TTGGCTGACAACATCAGATTCAAGTAATCCTGTTAATCAAGTTATTTCCTTGATTACGGGAGAATCATCTGTAAAGATTG
TGTCAAATCAGTCATCTGCTAATCAAGCAACGCCAAGTCAAGAATTGGCAGATTCAGTCTTAACAGACAGCGTTAAAGCT
CAGCTTGGTTCAAACTTAGAATGGAACGGCGCGGGAGCTTATTTGGTTAACGGAAATAAAACCGATTTGAATGCAAGAGT
AGCCAGCAAACCTTATGCCAATAACAAAACAAAAATTGTGCAAGGTCAGACTGTTCCAACGGTCGCAAATGCTTTGTTGA
GTAAGTTGACACGTCAATACAGAAGCCGTGAGGAAACTGGAAATGGGTCAACCTCTTGGACGCCAGCTGGCTGGCATCAA
GCCCAAAATATCTCTGGAAGATATAGTCATGCTGTTGACCGTGGGCATTTGCTTGGCTATGCTTTAGTCGGCGGCTTAAA
AGGCTTTGATGCTTCAACAAGCAATCCTGAAAATGTAGCCACTCAGACAGCTTGGGCAAATGAAGCTAGTTCAGAAGACT
CAACGGGTCAGAATTACTACGAAGGTCAGGTCAGAAGAGCACTTGATCAGAATAAACGTGTTCGTTACCGAGTGACTTTG
ATTTATGATGGCGATAATATTCTTGCTAGCGGGACACATTTGGAAGCAAAATCATCTGACGGTAGTTTAGAGTTTAATGT
TTTCATTCCAAATGTCCAAAGTGGTTTAAGCTTTGATTATTATTCAGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(98-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.644

81.944

0.562
  endA Streptococcus pneumoniae D39

68.644

81.944

0.562
  endA Streptococcus pneumoniae R6

68.644

81.944

0.562
  endA Streptococcus pneumoniae TIGR4

68.644

81.944

0.562

Multiple sequence alignment