Detailed information NTG1139728

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM64_RS01020
• Genome accession: NZ_LS483387
• Coordinates: 168282..169214 (+)
• Length: 310 a.a.
• NCBI ID: WP_000138506.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain NCTC8187
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 163282..174214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM64_RS01000 (NCTC8187_00198)	-	163494..165149 (+)	1656	WP_001118749.1	peptide ABC transporter substrate-binding protein	-
DQM64_RS01005 (NCTC8187_00199)	-	165268..166182 (+)	915	WP_000598965.1	ABC transporter permease	-
DQM64_RS01010 (NCTC8187_00200)	-	166192..167223 (+)	1032	WP_000764052.1	ABC transporter permease	-
DQM64_RS01015 (NCTC8187_00201)	oppD	167236..168282 (+)	1047	WP_000410286.1	ABC transporter ATP-binding protein	Regulator
DQM64_RS01020 (NCTC8187_00202)	amiF	168282..169214 (+)	933	WP_000138506.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 34855.67 Da
• Isoelectric Point: 6.7314

>NTDB_id=1139728 DQM64_RS01020 WP_000138506.1 168282..169214(+) (amiF) [Streptococcus agalactiae strain NCTC8187]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTPQEAEEYKKQIL

Nucleotide

• Length: 933 bp

>NTDB_id=1139728 DQM64_RS01020 WP_000138506.1 168282..169214(+) (amiF) [Streptococcus agalactiae strain NCTC8187]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGAGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGATATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGGAAACTGTTAGAAGTTGGAACATCTGATGAT
GTTTATAACAATCCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACCCCTGGTCATT
TTGTTTTATCTACACCCCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-267)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.545	99.355	0.542
amiF	Streptococcus thermophilus LMG 18311	54.221	99.355	0.539
amiF	Streptococcus salivarius strain HSISS4	54.426	98.387	0.535