Detailed information NTG1139685

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM82_RS01500
• Genome accession: NZ_LS483386
• Coordinates: 275158..276081 (+)
• Length: 307 a.a.
• NCBI ID: WP_023612424.1
• Uniprot ID: A0A5S4TJJ9
• Organism: Streptococcus pyogenes strain NCTC13742
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 270158..281081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM82_RS01485 (NCTC13742_00295)	amiC	271658..273160 (+)	1503	WP_011017334.1	ABC transporter permease	Regulator
DQM82_RS01490 (NCTC13742_00296)	amiD	273160..274086 (+)	927	WP_023612408.1	oligopeptide ABC transporter permease OppC	Regulator
DQM82_RS01495 (NCTC13742_00297)	amiE	274095..275165 (+)	1071	WP_023612409.1	ABC transporter ATP-binding protein	Regulator
DQM82_RS01500 (NCTC13742_00298)	amiF	275158..276081 (+)	924	WP_023612424.1	ABC transporter ATP-binding protein	Regulator
DQM82_RS10270	-	276119..276208 (-)	90	WP_110002794.1	IS3 family transposase	-
DQM82_RS01510	-	276229..276408 (-)	180	WP_023612403.1	hypothetical protein	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34741.94 Da
• Isoelectric Point: 6.4036

>NTDB_id=1139685 DQM82_RS01500 WP_023612424.1 275158..276081(+) (amiF) [Streptococcus pyogenes strain NCTC13742]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYYPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide

• Length: 924 bp

>NTDB_id=1139685 DQM82_RS01500 WP_023612424.1 275158..276081(+) (amiF) [Streptococcus pyogenes strain NCTC13742]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAGTCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGAATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAACCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATTATCCAGACCAGCATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-261)

3D structure

• AlphaFold DB: A0A5S4TJJ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	82.353	99.674	0.821
amiF	Streptococcus thermophilus LMD-9	82.026	99.674	0.818
amiF	Streptococcus salivarius strain HSISS4	82.026	99.674	0.818