Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DQM75_RS04080 Genome accession   NZ_LS483380
Coordinates   850509..851387 (+) Length   292 a.a.
NCBI ID   WP_111692381.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 845509..856387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS04050 (NCTC11824_00808) - 845702..846577 (+) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -
  DQM75_RS04055 (NCTC11824_00809) atpD 846745..848151 (+) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  DQM75_RS04060 (NCTC11824_00810) - 848164..848580 (+) 417 WP_012678110.1 F0F1 ATP synthase subunit epsilon -
  DQM75_RS04065 (NCTC11824_00811) - 848714..848950 (+) 237 WP_012678109.1 DUF1146 family protein -
  DQM75_RS04070 (NCTC11824_00812) murA 849014..850285 (+) 1272 WP_012678108.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQM75_RS04075 (NCTC11824_00813) - 850289..850477 (+) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  DQM75_RS04080 (NCTC11824_00814) endA 850509..851387 (+) 879 WP_111692381.1 DNA/RNA non-specific endonuclease Machinery gene
  DQM75_RS10040 - 851401..851559 (+) 159 WP_195757340.1 hypothetical protein -
  DQM75_RS04085 (NCTC11824_00815) pheS 852303..853346 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  DQM75_RS04095 (NCTC11824_00816) pheT 853536..855941 (+) 2406 WP_111692382.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31956.02 Da        Isoelectric Point: 10.1783

>NTDB_id=1139333 DQM75_RS04080 WP_111692381.1 850509..851387(+) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAESPKASRDWDTPSKALADSVMTAAIKQ
QLGDVITWNGTGAYIINHNKITLNAKVASLPYANNKTKLVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYNHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRRALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVAPSQH

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1139333 DQM75_RS04080 WP_111692381.1 850509..851387(+) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTGTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
AGTCACCAAAGGCAAGCAGAGACTGGGACACTCCCTCCAAGGCCTTGGCGGATTCGGTCATGACAGCTGCCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACCGGTGCCTATATTATTAACCATAATAAAATAACGCTAAATGCAAAGGT
AGCCAGTCTGCCCTATGCCAATAATAAAACAAAACTGGTACAAGGGCAAAGTGTTCCTACCGTAGCCAACGCCCTGCTAA
CCAAGTCAACTCGACAGTATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAAGGATTAAAGGGAAGATACAATCACGCAGTAGATAGAGGACACCTTCTGGGCTATGCACTTGTTGGCGGGCTAAA
GGGCTTTGATGCCTCAATGGCTAATCCCAGTAATATTGCTACTCAAACCGCATGGGCTAACCAAGCAGCCAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAGAGCTCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTGCAGATTGATTATCAAACAGGTCAGATCACTGTAGCCCCTTCACAGCATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.257

77.397

0.521
  endA Streptococcus pneumoniae D39

67.257

77.397

0.521
  endA Streptococcus pneumoniae R6

67.257

77.397

0.521
  endA Streptococcus pneumoniae TIGR4

67.257

77.397

0.521

Multiple sequence alignment