Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DQM54_RS03760 Genome accession   NZ_LS483375
Coordinates   762089..762928 (+) Length   279 a.a.
NCBI ID   WP_111723470.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 757089..767928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS03735 (NCTC3165_00741) tuf 757954..759150 (+) 1197 WP_020992675.1 elongation factor Tu -
  DQM54_RS03740 (NCTC3165_00742) tpiA 759424..760182 (+) 759 WP_111723469.1 triose-phosphate isomerase -
  DQM54_RS03745 - 760312..760545 (+) 234 WP_037622338.1 DUF1146 family protein -
  DQM54_RS03750 (NCTC3165_00743) murA 760583..761863 (+) 1281 WP_012000226.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQM54_RS03755 (NCTC3165_00744) - 761856..762044 (+) 189 WP_045502090.1 DNA-directed RNA polymerase subunit beta -
  DQM54_RS03760 (NCTC3165_00745) endA 762089..762928 (+) 840 WP_111723470.1 DNA/RNA non-specific endonuclease Machinery gene
  DQM54_RS03765 (NCTC3165_00746) - 763145..763846 (-) 702 WP_111723471.1 alpha/beta hydrolase-fold protein -
  DQM54_RS03770 (NCTC3165_00747) - 763827..764855 (-) 1029 WP_111723472.1 ABC transporter substrate-binding protein -
  DQM54_RS03775 (NCTC3165_00748) - 765000..765755 (-) 756 WP_111723473.1 ABC transporter ATP-binding protein -
  DQM54_RS03780 (NCTC3165_00749) - 765757..766803 (-) 1047 WP_111723474.1 FecCD family ABC transporter permease -
  DQM54_RS10915 - 767096..767203 (+) 108 Protein_725 DNA-entry nuclease -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30799.50 Da        Isoelectric Point: 10.1118

>NTDB_id=1139112 DQM54_RS03760 WP_111723470.1 762089..762928(+) (endA) [Streptococcus gordonii strain NCTC3165]
MKKKQEEKLFQSIVGLILALVLIAGANYFSNHQNQDNIKSNPQVQRTGRRDISTPEQALSQSVLTDSVRKQLKGSIEWNQ
AGAFIINGNKTDLNADIASQPYAQNQTKSVQGQLVPIIGNALLSKQTRQYKNREETGNGTTSWVPAGWHQLRNLTGDFNH
AVDRGHLLAYSLVGGLKNFDASTSNPVNIAVQTAWANQANSSSSTGQNFYESLIRKALDKKKRVRYRVTLIYANPDDLIA
AGSHLEAKSSDGSLEFNVFVPNIQTGIRINYRTGEVTVE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1139112 DQM54_RS03760 WP_111723470.1 762089..762928(+) (endA) [Streptococcus gordonii strain NCTC3165]
ATGAAGAAGAAACAAGAAGAGAAACTCTTTCAAAGCATAGTAGGACTGATTCTGGCACTTGTTCTGATAGCTGGTGCTAA
TTATTTCTCAAACCATCAGAATCAGGATAACATAAAGTCTAATCCACAGGTTCAAAGAACAGGAAGAAGGGATATCTCAA
CTCCCGAGCAAGCACTATCTCAGAGTGTATTGACTGATTCTGTTCGTAAGCAATTAAAAGGTAGCATAGAATGGAATCAG
GCAGGTGCTTTTATTATTAATGGCAACAAGACAGACCTGAATGCTGATATTGCCAGTCAGCCTTATGCACAAAATCAAAC
GAAGTCAGTTCAGGGACAGTTAGTACCAATAATTGGGAATGCACTGCTTTCTAAACAGACTAGACAATACAAAAATCGAG
AAGAAACAGGAAACGGGACGACAAGTTGGGTTCCTGCCGGCTGGCATCAGTTGAGAAATCTTACTGGAGATTTTAATCAT
GCTGTTGATCGAGGGCATTTATTAGCATATTCTTTAGTCGGAGGCTTAAAGAACTTTGATGCTTCTACAAGTAACCCAGT
GAATATCGCTGTTCAAACAGCTTGGGCAAATCAGGCAAACAGTTCTTCGTCTACTGGACAAAATTTTTATGAAAGCTTGA
TTCGGAAGGCTTTGGATAAAAAGAAGCGAGTCCGTTATCGAGTTACCTTGATTTATGCTAATCCTGATGACTTAATAGCA
GCGGGCTCTCATTTAGAAGCAAAGTCTAGCGATGGAAGTCTTGAGTTTAATGTCTTCGTTCCAAATATTCAAACCGGGAT
TCGTATTAACTATAGAACTGGAGAAGTAACAGTAGAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.304

80.287

0.548
  endA Streptococcus pneumoniae D39

68.304

80.287

0.548
  endA Streptococcus pneumoniae R6

68.304

80.287

0.548
  endA Streptococcus pneumoniae TIGR4

68.304

80.287

0.548

Multiple sequence alignment