Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   Q426_RS04855 Genome accession   NZ_CP006770
Coordinates   1034540..1035418 (-) Length   292 a.a.
NCBI ID   WP_014622727.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus CY     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1029540..1040418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q426_RS04840 (Q426_05135) pheT 1029990..1032395 (-) 2406 WP_014622731.1 phenylalanine--tRNA ligase subunit beta -
  Q426_RS04850 (Q426_05145) pheS 1032585..1033628 (-) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  Q426_RS10315 (Q426_05150) - 1034368..1034526 (-) 159 WP_014622728.1 hypothetical protein -
  Q426_RS04855 (Q426_05155) endA 1034540..1035418 (-) 879 WP_014622727.1 DNA/RNA non-specific endonuclease Machinery gene
  Q426_RS04860 (Q426_05160) - 1035450..1035638 (-) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  Q426_RS04865 (Q426_05165) murA 1035642..1036913 (-) 1272 WP_038674827.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q426_RS04870 (Q426_05170) - 1036977..1037213 (-) 237 WP_012678109.1 DUF1146 family protein -
  Q426_RS04875 (Q426_05175) - 1037347..1037763 (-) 417 WP_014622724.1 F0F1 ATP synthase subunit epsilon -
  Q426_RS04880 (Q426_05180) atpD 1037776..1039182 (-) 1407 WP_014622723.1 F0F1 ATP synthase subunit beta -
  Q426_RS04885 (Q426_05185) - 1039350..1040225 (-) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31840.94 Da        Isoelectric Point: 10.2312

>NTDB_id=113900 Q426_RS04855 WP_014622727.1 1034540..1035418(-) (endA) [Streptococcus equi subsp. zooepidemicus CY]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=113900 Q426_RS04855 WP_014622727.1 1034540..1035418(-) (endA) [Streptococcus equi subsp. zooepidemicus CY]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTGTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524

Multiple sequence alignment