Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DQM56_RS04295 Genome accession   NZ_LS483368
Coordinates   886184..887068 (+) Length   294 a.a.
NCBI ID   WP_111710501.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 881184..892068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS04265 (NCTC6176_00861) - 881377..882252 (+) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -
  DQM56_RS04270 (NCTC6176_00862) atpD 882420..883826 (+) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  DQM56_RS04275 (NCTC6176_00863) - 883839..884255 (+) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  DQM56_RS04280 (NCTC6176_00864) - 884389..884625 (+) 237 WP_012678109.1 DUF1146 family protein -
  DQM56_RS04285 (NCTC6176_00865) murA 884689..885960 (+) 1272 WP_111710929.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQM56_RS04290 (NCTC6176_00866) - 885964..886152 (+) 189 WP_041785421.1 DNA-directed RNA polymerase subunit beta -
  DQM56_RS04295 (NCTC6176_00867) endA 886184..887068 (+) 885 WP_111710501.1 DNA/RNA non-specific endonuclease Machinery gene
  DQM56_RS10020 - 887082..887240 (+) 159 WP_172453698.1 hypothetical protein -
  DQM56_RS04300 (NCTC6176_00869) pheS 887981..889024 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  DQM56_RS04310 (NCTC6176_00870) pheT 889214..891619 (+) 2406 WP_111710502.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 32126.28 Da        Isoelectric Point: 10.2449

>NTDB_id=1138895 DQM56_RS04295 WP_111710501.1 886184..887068(+) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MIKKKKDIRLLNAFLALLLVLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAGLPKASRDWDTPSKALADSVMTATI
KQQLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGW
HQVQGLKGRYNHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRRALDSNKRVRYRV
TLLYDGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVAPSQH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1138895 DQM56_RS04295 WP_111710501.1 886184..887068(+) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGTTCTTGGAACAGGTTA
TTTGGCAGGACATGATGACCTAGCAGCTGATAACCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGC
AAGCTGGGCTACCGAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATC
AAACAGCAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAATCATAATAAAACGACGCTAAATGC
AAAGGTAGCCAGTCTCCCCTATGCCAATAATAAAACAAAGCTGGTGCAAGGGCAAAGCGTTCCTACCGTAGCCAACGCCC
TGCTAACCAAGTCAACTCGACAGTATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGG
CATCAGGTTCAAGGATTAAAGGGAAGATACAATCACGCAGTAGATAGAGGACACCTTCTGGGCTATGCACTTGTTGGCGG
GCTAAAGGGCTTTGATGCCTCAATGGCTAATCCCAGTAATATTGCTACTCAAACCGCATGGGCCAATCAAGCAGCCAACG
AGCGATCAACCGGACAAAACTATTATGAAACAAAGATTCGCAGAGCCCTAGATAGCAACAAGCGTGTCCGCTATCGTGTA
ACCCTACTTTATGATGGAAATAACCTCTTAGCAAGCGGCAGTCACCTTGAGGCAAAGTCATCAGACGGTAGCTTAGAATT
TAACGTCTTTATCCCTAATGTACAGGCTGGATTGCAGATTGATTATCAAACAGGTCAGATCACTGTAGCCCCTTCACAGC
ATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(118-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.257

76.871

0.517
  endA Streptococcus pneumoniae D39

67.257

76.871

0.517
  endA Streptococcus pneumoniae R6

67.257

76.871

0.517
  endA Streptococcus pneumoniae TIGR4

67.257

76.871

0.517

Multiple sequence alignment