Detailed information NTG1138883

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM56_RS01815
• Genome accession: NZ_LS483368
• Coordinates: 347837..348772 (+)
• Length: 311 a.a.
• NCBI ID: WP_111677723.1
• Uniprot ID: A0AAX2LIV6
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC6176
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 342837..353772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM56_RS01795 (NCTC6176_00357)	-	342999..344657 (+)	1659	WP_111710269.1	peptide ABC transporter substrate-binding protein	-
DQM56_RS01800 (NCTC6176_00358)	-	344824..345738 (+)	915	WP_043052710.1	ABC transporter permease	-
DQM56_RS01805 (NCTC6176_00359)	-	345748..346779 (+)	1032	WP_014622277.1	ABC transporter permease	-
DQM56_RS01810 (NCTC6176_00360)	oppD	346791..347837 (+)	1047	WP_111710271.1	ABC transporter ATP-binding protein	Regulator
DQM56_RS01815 (NCTC6176_00361)	amiF	347837..348772 (+)	936	WP_111677723.1	ABC transporter ATP-binding protein	Regulator
DQM56_RS01820 (NCTC6176_00362)	rnjA	349355..351037 (-)	1683	WP_012514941.1	ribonuclease J1	-
DQM56_RS01825 (NCTC6176_00363)	-	351039..351269 (-)	231	WP_012514942.1	DNA-dependent RNA polymerase subunit epsilon	-
DQM56_RS01830 (NCTC6176_00364)	tsaB	351555..352253 (+)	699	WP_014622280.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQM56_RS01835 (NCTC6176_00365)	rimI	352256..352681 (+)	426	WP_043030444.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQM56_RS01840 (NCTC6176_00366)	tsaD	352671..353687 (+)	1017	WP_038674573.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35071.16 Da
• Isoelectric Point: 7.6971

>NTDB_id=1138883 DQM56_RS01815 WP_111677723.1 347837..348772(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEADQYRAERDL

Nucleotide

• Length: 936 bp

>NTDB_id=1138883 DQM56_RS01815 WP_111677723.1 347837..348772(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAAGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGTGAGATTATTTTTAATGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTTAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCTGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTTTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGTCAGGAGTTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACGCAGGCCGAAGCCGATCAGTACCGAGCAGAGCGTGACCTCTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.248	98.392	0.534
amiF	Streptococcus thermophilus LMG 18311	53.922	98.392	0.531
amiF	Streptococcus salivarius strain HSISS4	53.595	98.392	0.527