Detailed information NTG1138863

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM52_RS09355
• Genome accession: NZ_LS483367
• Coordinates: 1847555..1848487 (-)
• Length: 310 a.a.
• NCBI ID: WP_003060110.1
• Uniprot ID: A0A9X8T5Q4
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1842555..1853487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM52_RS09330 (NCTC5371_01905)	tsaD	1843045..1844061 (-)	1017	WP_003056674.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
DQM52_RS09335 (NCTC5371_01906)	rimI	1844051..1844476 (-)	426	WP_003056684.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQM52_RS09340 (NCTC5371_01907)	tsaB	1844478..1845176 (-)	699	WP_003062223.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQM52_RS09345 (NCTC5371_01908)	-	1845462..1845692 (+)	231	WP_003056704.1	DNA-dependent RNA polymerase subunit epsilon	-
DQM52_RS09350 (NCTC5371_01909)	rnjA	1845694..1847376 (+)	1683	WP_003056700.1	ribonuclease J1	-
DQM52_RS09355 (NCTC5371_01910)	amiF	1847555..1848487 (-)	933	WP_003060110.1	ATP-binding cassette domain-containing protein	Regulator
DQM52_RS09360 (NCTC5371_01911)	oppD	1848480..1849532 (-)	1053	WP_012767556.1	ABC transporter ATP-binding protein	Regulator
DQM52_RS09365 (NCTC5371_01912)	-	1849544..1850575 (-)	1032	WP_003058013.1	ABC transporter permease	-
DQM52_RS09370 (NCTC5371_01913)	-	1850585..1851499 (-)	915	WP_003052794.1	ABC transporter permease	-
DQM52_RS09375 (NCTC5371_01914)	-	1851767..1853422 (-)	1656	WP_111681896.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35203.02 Da
• Isoelectric Point: 6.6437

>NTDB_id=1138863 DQM52_RS09355 WP_003060110.1 1847555..1848487(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADQYRREYH

Nucleotide

• Length: 933 bp

>NTDB_id=1138863 DQM52_RS09355 WP_003060110.1 1847555..1848487(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCCGGATCAGGAAAAACAA
CTGTTGGTCGCGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGGACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTCACAGCTTCAAAGGCAGAACGAGAAGAACGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAACAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTTAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTAGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGACCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATCATCCTATTCATCCTTATACCAAGAGCCTACTCTCGGCTATTCCTGAACCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTATATGATCCAAGTCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACGCCAGGCCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGACCAATATCGACGGGAGTATCATTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.098	98.387	0.532
amiF	Streptococcus thermophilus LMG 18311	53.77	98.387	0.529
amiF	Streptococcus salivarius strain HSISS4	53.443	98.387	0.526