Detailed information NTG1138783

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: DQM60_RS05535
• Genome accession: NZ_LS483366
• Coordinates: 1230641..1231522 (-)
• Length: 293 a.a.
• NCBI ID: WP_049554297.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain NCTC7366
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1228920..1230512	1230641..1231522	flank	129

Gene organization within MGE regions

Location: 1228920..1231522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM60_RS05530 (NCTC7366_01114)	-	1228920..1230512 (-)	1593	WP_415244979.1	IS1182 family transposase	-
DQM60_RS05535 (NCTC7366_01115)	endA	1230641..1231522 (-)	882	WP_049554297.1	DNA/RNA non-specific endonuclease	Machinery gene

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31560.31 Da
• Isoelectric Point: 10.3798

>NTDB_id=1138783 DQM60_RS05535 WP_049554297.1 1230641..1231522(-) (endA) [Streptococcus salivarius strain NCTC7366]
MAKRKTSLTNKQKRQLVSLLIAVLIAVLGYIGTSNKLSPNNPIKQVASLVSGKSNNSVKSKGSTRGQSTPQEQLAETVMT
SSVKSQLGNAIEWNGAGAYIVNGNKTNLNAKVSSQPYASNQVKTVQGQTVPTVANALLSKATRQYKNRQETGNGSTSWTP
AGWHQVHNLSGEYSHAVDRGHLLGYALVGGLKGFDASTSNPENIAVQTAWANQANSETSTGQNYYESLVRKAQDKNKRVR
YRVTLIYEGDNLIPSGSHLEAKSADGSLEFNVFVPNVQKGITLDYYSGKVTVN

Nucleotide

• Length: 882 bp

>NTDB_id=1138783 DQM60_RS05535 WP_049554297.1 1230641..1231522(-) (endA) [Streptococcus salivarius strain NCTC7366]
ATGGCAAAAAGAAAGACATCTTTAACAAATAAACAGAAACGTCAACTAGTCTCGTTACTAATAGCGGTCTTGATTGCAGT
GTTAGGTTACATTGGAACGAGTAATAAGCTCTCACCTAACAATCCAATCAAGCAGGTAGCTAGTCTAGTCTCGGGAAAAT
CTAATAACTCCGTCAAATCAAAAGGCTCAACAAGAGGGCAGTCTACGCCACAAGAGCAGCTCGCTGAGACAGTGATGACT
AGCTCTGTCAAGAGTCAACTAGGAAACGCCATAGAATGGAATGGGGCAGGGGCTTATATTGTTAATGGTAATAAGACCAA
TCTTAATGCTAAGGTATCTAGCCAACCCTATGCTAGTAACCAAGTTAAAACCGTTCAAGGACAAACGGTTCCTACAGTTG
CGAATGCCTTGTTAAGTAAAGCGACCAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGCTCAACTTCTTGGACACCA
GCTGGATGGCATCAAGTTCACAATCTTTCAGGAGAGTATAGCCATGCCGTAGACCGAGGCCATTTGTTAGGTTATGCGCT
AGTAGGTGGCCTCAAAGGATTTGATGCCTCGACTTCAAATCCAGAGAATATTGCTGTTCAAACTGCTTGGGCTAACCAAG
CTAATAGTGAAACTTCCACAGGCCAAAACTATTATGAAAGCCTGGTACGAAAAGCTCAGGATAAAAACAAACGTGTCCGT
TACCGCGTGACTCTCATTTATGAAGGAGATAACCTGATTCCATCAGGATCACATCTTGAAGCCAAGTCAGCAGATGGCTC
GCTTGAGTTCAATGTCTTCGTTCCAAATGTCCAAAAGGGAATTACCCTAGATTATTATTCAGGGAAAGTAACGGTGAATT
AA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (99-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	71.032	86.007	0.611
endA	Streptococcus pneumoniae D39	71.032	86.007	0.611
endA	Streptococcus pneumoniae R6	71.032	86.007	0.611
endA	Streptococcus pneumoniae TIGR4	71.032	86.007	0.611