Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQM55_RS11915 Genome accession   NZ_LS483364
Coordinates   200082..200870 (+) Length   262 a.a.
NCBI ID   WP_415244968.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11086     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 195082..205870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS01065 (NCTC11086_00208) galU 195289..196194 (-) 906 WP_002893959.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DQM55_RS01070 (NCTC11086_00209) - 196211..197233 (-) 1023 WP_002899188.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DQM55_RS01075 (NCTC11086_00210) - 197393..199099 (+) 1707 WP_111675194.1 ABC transporter ATP-binding protein -
  DQM55_RS11905 - 199101..199239 (+) 139 Protein_186 ABC transporter ATP-binding protein -
  DQM55_RS11910 - 199218..199946 (+) 729 Protein_187 ABC transporter ATP-binding protein -
  DQM55_RS11915 rcrQ 200082..200870 (+) 789 WP_415244968.1 ABC transporter ATP-binding protein Regulator
  DQM55_RS01085 (NCTC11086_00212) amiA 200987..202960 (-) 1974 WP_111675196.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS01090 (NCTC11086_00213) - 203189..203878 (+) 690 WP_002893948.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQM55_RS01100 (NCTC11086_00214) - 204144..204593 (+) 450 WP_002899180.1 8-oxo-dGTP diphosphatase -
  DQM55_RS11700 (NCTC11086_00215) - 205091..205435 (-) 345 WP_172454694.1 hypothetical protein -
  DQM55_RS01115 (NCTC11086_00216) - 205650..205841 (-) 192 WP_111675197.1 hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29199.89 Da        Isoelectric Point: 4.4043

>NTDB_id=1138705 DQM55_RS11915 WP_415244968.1 200082..200870(+) (rcrQ) [Streptococcus sanguinis strain NCTC11086]
MFDAPEEVRPENAPVFTELTDSVEIKHVDFSYVEGKPILKDVSILAPKGKMTAVVGPTGSGKTTIMNLLNRFYDVDSGSI
EFDGRDIRDYDLDSLRSHVGIVLQESVLFSGTIRDNIRFGVPDASQEMVETAARATHIHDYIESLPDKYDTLVDDDQNIF
STGQKQLISIARTLLTDPQVLILDEATSNVDTVTESKIQQAMEAIVAGRTSFVIAHRLKTILNADQIIVLKDGEVIEQGD
HHQLLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1138705 DQM55_RS11915 WP_415244968.1 200082..200870(+) (rcrQ) [Streptococcus sanguinis strain NCTC11086]
ATGTTTGATGCACCAGAGGAAGTCCGACCAGAGAATGCACCTGTTTTCACAGAGCTTACAGACTCCGTGGAGATCAAGCA
TGTGGACTTTTCTTATGTGGAAGGCAAGCCTATTCTCAAAGACGTATCTATTTTAGCCCCTAAGGGCAAGATGACGGCTG
TTGTTGGCCCTACTGGTTCAGGTAAGACGACCATTATGAACCTGCTCAATCGCTTTTACGATGTGGATAGTGGCAGTATT
GAGTTTGACGGTCGCGACATTCGAGATTATGACTTGGACAGTCTGCGGAGCCATGTGGGGATTGTTCTGCAGGAATCGGT
GCTCTTTAGTGGCACGATTCGGGACAATATCCGCTTCGGTGTGCCGGATGCTAGTCAGGAGATGGTCGAAACGGCTGCGC
GTGCGACTCATATTCATGACTATATCGAAAGTCTGCCAGACAAATATGATACCTTGGTGGATGATGATCAGAATATCTTT
TCAACTGGGCAGAAACAGTTGATTTCCATTGCTAGAACTTTGCTGACGGACCCGCAAGTCTTGATTTTGGACGAGGCGAC
GTCTAATGTCGATACGGTAACAGAGAGCAAGATTCAGCAGGCTATGGAAGCTATTGTAGCTGGTCGAACTAGCTTTGTCA
TTGCCCATCGCCTCAAGACAATCCTCAATGCTGACCAGATTATTGTCCTCAAAGATGGAGAGGTCATTGAACAGGGCGAT
CATCACCAGCTCCTCAAACTCGGCGGTTTCTACTCAGAACTTTATCATAACCAGTTTGTGTTTGAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(39-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

48.649

98.855

0.481

Multiple sequence alignment