Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   DQM41_RS07300 Genome accession   NZ_LS483362
Coordinates   1407270..1407878 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni subsp. jejuni strain NCTC11168     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1402270..1412878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM41_RS07275 (NCTC11168_01462) - 1402427..1403191 (+) 765 WP_002851318.1 TIGR02757 family protein -
  DQM41_RS07280 (NCTC11168_01463) - 1403195..1403959 (+) 765 WP_002851426.1 TSUP family transporter -
  DQM41_RS07285 (NCTC11168_01464) ctsF 1403952..1405133 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  DQM41_RS07290 (NCTC11168_01465) ctsE 1405130..1406689 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  DQM41_RS07295 (NCTC11168_01466) ctsX 1406679..1407266 (-) 588 WP_002851370.1 membrane protein Machinery gene
  DQM41_RS07300 (NCTC11168_01467) ctsP 1407270..1407878 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  DQM41_RS07305 (NCTC11168_01468) ctsD 1407871..1409289 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DQM41_RS07310 (NCTC11168_01469) ctsR 1409261..1409578 (-) 318 WP_002851255.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=1138578 DQM41_RS07300 WP_002851464.1 1407270..1407878(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain NCTC11168]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1138578 DQM41_RS07300 WP_002851464.1 1407270..1407878(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain NCTC11168]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment