Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   DQM41_RS06675 Genome accession   NZ_LS483362
Coordinates   1275917..1276432 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni subsp. jejuni strain NCTC11168     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270917..1281432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM41_RS06660 (NCTC11168_01334) - 1271029..1272846 (-) 1818 WP_010891928.1 motility associated factor glycosyltransferase family protein -
  DQM41_RS06665 (NCTC11168_01335) - 1272843..1274666 (-) 1824 WP_010891929.1 motility associated factor glycosyltransferase family protein -
  DQM41_RS06670 (NCTC11168_01336) - 1274676..1275917 (-) 1242 WP_002864247.1 DUF2920 family protein -
  DQM41_RS06675 (NCTC11168_01337) ctsG 1275917..1276432 (-) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DQM41_RS06680 (NCTC11168_01338) tsaD 1276433..1277440 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DQM41_RS06685 (NCTC11168_01339) - 1277437..1278831 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  DQM41_RS06690 (NCTC11168_01340) dxr 1278833..1279903 (-) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  DQM41_RS06695 (NCTC11168_01341) cdsA 1279900..1280625 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  DQM41_RS06700 (NCTC11168_01342) - 1280634..1280972 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=1138571 DQM41_RS06675 WP_002799196.1 1275917..1276432(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain NCTC11168]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1138571 DQM41_RS06675 WP_002799196.1 1275917..1276432(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain NCTC11168]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment