Detailed information NTG1138544

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM53_RS09450
• Genome accession: NZ_LS483361
• Coordinates: 1908527..1909459 (-)
• Length: 310 a.a.
• NCBI ID: WP_111717596.1
• Uniprot ID: A0A9X8T0F0
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1903527..1914459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM53_RS09425 (NCTC6179_01935)	tsaD	1904016..1905032 (-)	1017	WP_111717593.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
DQM53_RS09430 (NCTC6179_01936)	rimI	1905022..1905447 (-)	426	WP_111717594.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQM53_RS09435 (NCTC6179_01937)	tsaB	1905449..1906147 (-)	699	WP_111717595.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQM53_RS09440 (NCTC6179_01938)	-	1906433..1906663 (+)	231	WP_003056704.1	DNA-dependent RNA polymerase subunit epsilon	-
DQM53_RS09445 (NCTC6179_01939)	rnjA	1906665..1908347 (+)	1683	WP_003056700.1	ribonuclease J1	-
DQM53_RS09450 (NCTC6179_01940)	amiF	1908527..1909459 (-)	933	WP_111717596.1	ATP-binding cassette domain-containing protein	Regulator
DQM53_RS09455 (NCTC6179_01941)	oppD	1909452..1910504 (-)	1053	WP_111717597.1	ABC transporter ATP-binding protein	Regulator
DQM53_RS09460 (NCTC6179_01942)	-	1910516..1911547 (-)	1032	WP_111717598.1	ABC transporter permease	-
DQM53_RS09465 (NCTC6179_01943)	-	1911557..1912471 (-)	915	WP_111717599.1	ABC transporter permease	-
DQM53_RS09470 (NCTC6179_01944)	-	1912739..1914394 (-)	1656	WP_003058031.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35189.00 Da
• Isoelectric Point: 6.6435

>NTDB_id=1138544 DQM53_RS09450 WP_111717596.1 1908527..1909459(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREDRVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADQYRREYH

Nucleotide

• Length: 933 bp

>NTDB_id=1138544 DQM53_RS09450 WP_111717596.1 1908527..1909459(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCCGGATCAGGAAAAACAA
CTGTTGGTCGCGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGAACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTAACAGCTTCAAAGGCAGAACGAGAAGACCGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAATAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTGAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTGGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGACCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATCACCCTATTCATCCTTATACCAAGAGCCTACTCTCGGCTATTCCTGAGCCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTGTATGATCCAAGTCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACTCCAGGCCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGACCAATATCGACGGGAGTATCATTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.098	98.387	0.532
amiF	Streptococcus thermophilus LMG 18311	53.77	98.387	0.529
amiF	Streptococcus salivarius strain HSISS4	53.443	98.387	0.526