Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DQM53_RS04345 Genome accession   NZ_LS483361
Coordinates   824254..825120 (+) Length   288 a.a.
NCBI ID   WP_111716020.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 819254..830120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS04320 (NCTC6179_00887) atpD 820290..821696 (+) 1407 WP_111716013.1 F0F1 ATP synthase subunit beta -
  DQM53_RS04325 (NCTC6179_00888) - 821709..822125 (+) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  DQM53_RS04330 (NCTC6179_00889) - 822454..822690 (+) 237 WP_277997757.1 DUF1146 family protein -
  DQM53_RS04335 (NCTC6179_00890) murA 822755..824026 (+) 1272 WP_111716016.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQM53_RS04340 (NCTC6179_00891) - 824030..824218 (+) 189 WP_111716018.1 DNA-directed RNA polymerase subunit beta -
  DQM53_RS04345 (NCTC6179_00892) endA 824254..825120 (+) 867 WP_111716020.1 DNA/RNA non-specific endonuclease Machinery gene
  DQM53_RS04350 (NCTC6179_00894) pheS 825403..826446 (+) 1044 WP_111716023.1 phenylalanine--tRNA ligase subunit alpha -
  DQM53_RS04355 (NCTC6179_00895) pheT 826656..829061 (+) 2406 WP_111716026.1 phenylalanine--tRNA ligase subunit beta -
  DQM53_RS04360 (NCTC6179_00896) - 829174..829551 (+) 378 WP_111716028.1 OsmC family protein -
  DQM53_RS04365 (NCTC6179_00897) - 829544..829930 (+) 387 WP_111716031.1 DUF1722 domain-containing protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31916.95 Da        Isoelectric Point: 10.0753

>NTDB_id=1138525 DQM53_RS04345 WP_111716020.1 824254..825120(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVYSEVPTEALSASVLTKSIKEQ
LGSNIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYQNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIVINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1138525 DQM53_RS04345 WP_111716020.1 824254..825120(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAACCATCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCGGCTTCTGTCTTAACCAAATCCATTAAGGAACAA
TTAGGTTCCAATATTGAATGGAATGGAGCAGGCGCTTATATTATCAACCGGAACAAAACAGATTTAAACGCAAGCGTAGC
CAGTCTGCCCTATGCTAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCAAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGATCATGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTTGGTGGACTGAAAGG
TTTTGATGCTTCTACCAGTAATCCTGATAATATTGCCACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGATTAGTACGTCGTGCATTGGATAAGGGCAAAAGGGTCCGTTATCGTGTTACCTTGCTT
TATGATGGTGATAACCTGTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTCCAAGCAGGGCTGACGGTTGATTATCGAACAGGACAGATTGTCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(119-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5

Multiple sequence alignment