Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DQL13_RS04175 Genome accession   NZ_LS483354
Coordinates   873533..874411 (+) Length   292 a.a.
NCBI ID   WP_041785424.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11606     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 868533..879411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL13_RS04145 (NCTC11606_00824) - 868726..869601 (+) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -
  DQL13_RS04150 (NCTC11606_00825) atpD 869769..871175 (+) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  DQL13_RS04155 (NCTC11606_00826) - 871188..871604 (+) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  DQL13_RS04160 (NCTC11606_00827) - 871738..871974 (+) 237 WP_041785418.1 DUF1146 family protein -
  DQL13_RS04165 (NCTC11606_00828) murA 872038..873309 (+) 1272 WP_012678108.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQL13_RS04170 (NCTC11606_00829) - 873313..873501 (+) 189 WP_041785421.1 DNA-directed RNA polymerase subunit beta -
  DQL13_RS04175 (NCTC11606_00830) endA 873533..874411 (+) 879 WP_041785424.1 DNA/RNA non-specific endonuclease Machinery gene
  DQL13_RS09865 - 874425..874583 (+) 159 WP_012515438.1 hypothetical protein -
  DQL13_RS04180 (NCTC11606_00831) pheS 875326..876369 (+) 1044 WP_012515439.1 phenylalanine--tRNA ligase subunit alpha -
  DQL13_RS04190 (NCTC11606_00832) pheT 876559..878964 (+) 2406 WP_111721662.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31911.98 Da        Isoelectric Point: 10.2309

>NTDB_id=1138156 DQL13_RS04175 WP_041785424.1 873533..874411(+) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAESPKASRDWDTPSKALADSVMTAAIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQRGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1138156 DQL13_RS04175 WP_041785424.1 873533..874411(+) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTGGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
AGTCACCAAAGGCAAGCAGAGACTGGGACACTCCCTCCAAGGCCTTGGCGGATTCGGTCATGACAGCTGCCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACCGGTGCCTATATTATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGTTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAAGAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524

Multiple sequence alignment