Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQM59_RS06075 Genome accession   NZ_LS483349
Coordinates   1175840..1177594 (-) Length   584 a.a.
NCBI ID   WP_002280030.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10449     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1175840..1210896 1175840..1177594 within 0


Gene organization within MGE regions


Location: 1175840..1210896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM59_RS06075 (NCTC10449_01178) rcrQ 1175840..1177594 (-) 1755 WP_002280030.1 ABC transporter ATP-binding protein Regulator
  DQM59_RS06080 (NCTC10449_01179) rcrP 1177584..1179386 (-) 1803 WP_002280031.1 ABC transporter ATP-binding protein Regulator
  DQM59_RS06085 (NCTC10449_01180) rcrR 1179390..1179824 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM59_RS06090 (NCTC10449_01181) queC 1180376..1181029 (+) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  DQM59_RS06095 (NCTC10449_01182) queD 1181029..1181475 (+) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  DQM59_RS06100 (NCTC10449_01183) queE 1181472..1182188 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  DQM59_RS06105 (NCTC10449_01184) queF 1182201..1182689 (+) 489 WP_002280032.1 preQ(1) synthase -
  DQM59_RS06110 (NCTC10449_01185) - 1182798..1183181 (+) 384 WP_002265142.1 DUF3021 family protein -
  DQM59_RS06115 (NCTC10449_01186) gdhA 1183293..1184642 (-) 1350 WP_002280033.1 NADP-specific glutamate dehydrogenase -
  DQM59_RS06120 (NCTC10449_01187) - 1185289..1185798 (+) 510 WP_002262901.1 DUF308 domain-containing protein -
  DQM59_RS06125 (NCTC10449_01188) gtfD 1185970..1190358 (-) 4389 WP_002280370.1 glucosyltransferase-S -
  DQM59_RS06130 (NCTC10449_01189) - 1190579..1191499 (-) 921 WP_002280369.1 AEC family transporter -
  DQM59_RS06135 (NCTC10449_01190) - 1191615..1193387 (-) 1773 WP_002280368.1 ABC transporter ATP-binding protein -
  DQM59_RS06140 (NCTC10449_01191) - 1193398..1195134 (-) 1737 WP_002280367.1 ABC transporter ATP-binding protein -
  DQM59_RS06145 (NCTC10449_01192) - 1195591..1197459 (-) 1869 WP_002280366.1 ABC-F family ATP-binding cassette domain-containing protein -
  DQM59_RS06150 (NCTC10449_01193) - 1197462..1198667 (-) 1206 WP_002266717.1 CCA tRNA nucleotidyltransferase -
  DQM59_RS06155 (NCTC10449_01194) dapB 1198664..1199431 (-) 768 WP_002262893.1 4-hydroxy-tetrahydrodipicolinate reductase -
  DQM59_RS06160 (NCTC10449_01195) - 1199443..1200288 (-) 846 WP_002266545.1 DegV family protein -
  DQM59_RS06165 (NCTC10449_01196) - 1200294..1200668 (-) 375 WP_002262891.1 DUF1149 family protein -
  DQM59_RS06170 (NCTC10449_01197) - 1200777..1202318 (-) 1542 WP_002280365.1 hypothetical protein -
  DQM59_RS06175 (NCTC10449_01198) - 1202305..1203021 (-) 717 WP_002265102.1 ABC transporter ATP-binding protein -
  DQM59_RS06180 (NCTC10449_01199) - 1203096..1203701 (-) 606 WP_002280364.1 TetR/AcrR family transcriptional regulator -
  DQM59_RS06185 (NCTC10449_01200) - 1203864..1204367 (-) 504 WP_002280363.1 phosphatase PAP2 family protein -
  DQM59_RS06190 (NCTC10449_01201) - 1204608..1205687 (-) 1080 WP_002262882.1 serine hydrolase domain-containing protein -
  DQM59_RS06195 (NCTC10449_01202) galE 1205953..1206954 (-) 1002 WP_002269393.1 UDP-glucose 4-epimerase GalE -
  DQM59_RS06200 (NCTC10449_01203) galT 1207103..1208578 (-) 1476 WP_002280362.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  DQM59_RS06205 (NCTC10449_01204) - 1208583..1209755 (-) 1173 WP_002280361.1 galactokinase -
  DQM59_RS06210 (NCTC10449_01205) - 1209898..1210896 (+) 999 WP_002280360.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64603.66 Da        Isoelectric Point: 5.7674

>NTDB_id=1137891 DQM59_RS06075 WP_002280030.1 1175840..1177594(-) (rcrQ) [Streptococcus mutans strain NCTC10449]
MENKKKSLLSQMAPYLKGYKALFGLAVIFTIVSSTITVIGPDRLKEMTDTMTKGLAGKIDLDKIGEIALTLALLYFAGAL
VSYTASFIVSTLIQKFSQRLRNAIADKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAIILLIGSIFMM
IKTNGALAATAILSVFAGFVLSTVIMAKSQPLFKKQQANLADVSGYVEEVYSGHNVVSSYNAIQQSKKQFENLNDQLFAS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGATMAINGDITMGTIVAFMTYVRIFTQPIAQIAQGITQLQSANAAMGRVFE
FLDEEEIEDENHKVKQLEKVEGNVNFDNVFFGYSPDKTIIHDFSAHAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVDRGM
ISIDGVNIHDMTREEVHDAFAMVLQDTWLFEGTVKENLIYNQKHIIDEQVIAAAKAVGVHHFIKTLPKGYDTVLDDSVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQRAMDHLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMAENGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=1137891 DQM59_RS06075 WP_002280030.1 1175840..1177594(-) (rcrQ) [Streptococcus mutans strain NCTC10449]
ATGGAAAATAAGAAGAAATCATTATTAAGCCAAATGGCTCCTTACCTTAAAGGCTATAAGGCTTTATTTGGACTTGCTGT
CATTTTTACTATCGTTTCAAGTACGATTACTGTTATTGGACCTGACCGGCTGAAAGAGATGACAGATACCATGACCAAAG
GGCTGGCAGGAAAAATTGATTTAGATAAAATCGGTGAGATTGCTCTAACCTTGGCTCTCTTATACTTTGCTGGTGCTTTG
GTTTCTTATACTGCTAGCTTTATTGTGTCCACTTTGATTCAAAAGTTTTCGCAACGTCTGCGCAATGCCATTGCAGATAA
AATCAATAAGGTACCGCTCAAATATTTTGATAGCCATTCACAAGGAGATACCTTGTCTCGAGTGACCAATGATGTGGATT
TAATGACACAGTCTTTCAACCAAAGTTTAGTTTCAATGGTAGCAGCTATAATTCTCCTGATTGGCTCTATTTTCATGATG
ATTAAAACCAATGGAGCTCTTGCAGCGACCGCTATTTTGTCTGTTTTTGCTGGTTTTGTGTTATCCACTGTTATCATGGC
CAAGAGCCAGCCGCTTTTTAAAAAGCAACAAGCTAATCTAGCCGATGTCAGCGGTTATGTTGAAGAGGTCTATTCAGGTC
ATAATGTGGTTTCTAGTTACAATGCGATTCAGCAAAGCAAGAAGCAGTTTGAAAACTTGAATGACCAATTATTTGCAAGT
ATGTGGAAATCACAATTCTTTTCTGGAATTATGATGCCCCTTATGCAATTCATCGGAAATTTTGGGTATGTCATGGTCTG
TATTGTCGGTGCTACCATGGCTATTAACGGCGATATTACTATGGGAACGATTGTTGCCTTTATGACTTACGTCCGTATTT
TTACTCAGCCCATTGCGCAGATTGCTCAAGGAATCACTCAATTGCAATCAGCTAATGCTGCTATGGGACGTGTCTTTGAA
TTTCTTGATGAGGAAGAAATAGAAGACGAAAACCATAAAGTTAAACAACTTGAAAAAGTTGAAGGAAATGTTAATTTTGA
CAATGTTTTCTTTGGTTATAGTCCTGATAAAACTATTATTCATGATTTCTCGGCTCATGCTAAGGCTGGTCAAAAAATTG
CTATTGTGGGACCGACTGGTGCGGGTAAGACAACGATTGTTAACTTACTTATGCGTTTCTATGAGGTTGATAGAGGGATG
ATTTCTATTGATGGAGTTAATATCCATGATATGACACGAGAAGAAGTGCATGATGCTTTTGCCATGGTACTCCAAGATAC
TTGGCTCTTTGAAGGTACAGTTAAGGAAAATCTGATTTATAATCAAAAACATATTATTGATGAGCAAGTGATTGCAGCAG
CTAAGGCAGTTGGTGTTCATCATTTCATCAAGACTTTACCTAAGGGTTATGATACTGTTTTAGATGATTCGGTCACCTTA
TCAGTCGGTCAAAAACAACTCTTGACCATTGCACGTGCTCTCCTTAAAGATGCACCGCTTCTGATACTTGATGAAGCAAC
TTCCTCTGTTGATACTCGTACGGAAGAACTTATTCAAAGGGCTATGGATCATTTGATGGAGGGGCGGACATCATTCGTTA
TTGCCCATCGTCTGTCAACTATTCGCAATGCTGATCTTATTCTTGTCATGAGAGATGGTAATATTATTGAACAAGGCAGC
CATGACCAATTGATGGCAGAAAATGGCTTCTATGCCGATCTCTATAATAGTCAATTTACAGAAGAAGTGGCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

99.658

100

0.997

Multiple sequence alignment