Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DQM48_RS03290 Genome accession   NZ_LS483348
Coordinates   614616..615482 (+) Length   288 a.a.
NCBI ID   WP_058813771.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 609616..620482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS03260 (NCTC8738_00668) - 609840..610715 (+) 876 WP_074563384.1 F0F1 ATP synthase subunit gamma -
  DQM48_RS03265 (NCTC8738_00669) atpD 610783..612189 (+) 1407 WP_020916492.1 F0F1 ATP synthase subunit beta -
  DQM48_RS03270 (NCTC8738_00670) - 612202..612618 (+) 417 WP_020916493.1 F0F1 ATP synthase subunit epsilon -
  DQM48_RS03275 (NCTC8738_00671) - 612747..612983 (+) 237 WP_111698364.1 DUF1146 family protein -
  DQM48_RS03280 (NCTC8738_00672) murA 613045..614319 (+) 1275 WP_043895004.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQM48_RS03285 (NCTC8738_00673) - 614323..614511 (+) 189 WP_020916495.1 DNA-directed RNA polymerase subunit beta -
  DQM48_RS03290 (NCTC8738_00674) endA 614616..615482 (+) 867 WP_058813771.1 DNA/RNA non-specific endonuclease Machinery gene
  DQM48_RS03295 (NCTC8738_00675) pheS 615774..616817 (+) 1044 WP_014334511.1 phenylalanine--tRNA ligase subunit alpha -
  DQM48_RS03300 (NCTC8738_00676) - 616850..617374 (+) 525 WP_058813772.1 GNAT family N-acetyltransferase -
  DQM48_RS03305 (NCTC8738_00677) pheT 617444..619849 (+) 2406 WP_111698366.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30987.36 Da        Isoelectric Point: 9.5053

>NTDB_id=1137822 DQM48_RS03290 WP_058813771.1 614616..615482(+) (endA) [Streptococcus lutetiensis strain NCTC8738]
MVKKSKLSKQAKSFIFLLVLLLSIGAGWLTTSDSSNPVNQVISLITGESSVKIVSNQSSANQATPSQELADSVLTDSVKA
QLGSNLEWNGAGAYLVNGNKTDLNARVASKPYANNKTKIVQGQTVPTVANALLSKLTRQYRSREETGNGSTSWTPAGWHQ
AQNISGRYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEASSEDSTGQNYYEGQVRRALDQNKRVRYRVTL
IYDGDNILASGTHLEAKSSDGSLEFNVFIPNVQSGLSFDYYSGKVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1137822 DQM48_RS03290 WP_058813771.1 614616..615482(+) (endA) [Streptococcus lutetiensis strain NCTC8738]
ATGGTAAAGAAATCAAAACTGTCTAAACAGGCAAAATCATTTATTTTTTTATTAGTTTTATTGCTTAGTATTGGTGCGGG
TTGGCTGACAACATCAGATTCAAGTAATCCTGTTAATCAAGTTATTTCCTTGATTACGGGAGAATCATCTGTAAAGATTG
TGTCAAATCAGTCATCTGCTAATCAAGCAACGCCAAGTCAAGAATTGGCAGATTCAGTCTTAACAGACAGCGTTAAAGCT
CAGCTTGGTTCAAACTTAGAATGGAACGGCGCGGGAGCTTATTTGGTTAACGGAAATAAAACCGATTTGAATGCAAGAGT
AGCCAGCAAACCTTATGCCAATAACAAAACAAAAATTGTGCAAGGTCAGACTGTTCCAACGGTCGCAAATGCTTTGTTGA
GTAAGTTGACACGTCAATACAGAAGCCGTGAGGAAACTGGAAATGGGTCAACCTCTTGGACGCCAGCTGGCTGGCATCAA
GCCCAAAATATCTCTGGAAGATATAGTCATGCTGTTGACCGTGGGCATTTGCTTGGCTATGCTTTAGTCGGCGGCTTAAA
AGGCTTTGATGCTTCAACAAGCAATCCTGAAAATGTAGCCACTCAGACAGCTTGGGCAAATGAAGCTAGTTCAGAAGACT
CAACGGGTCAGAATTACTACGAAGGTCAGGTCAGAAGAGCACTTGATCAGAATAAACGTGTTCGTTACCGAGTGACTTTG
ATTTATGATGGCGATAATATTCTTGCTAGCGGGACACATTTGGAAGCAAAATCATCTGACGGTAGTTTAGAGTTTAATGT
TTTCATTCCAAATGTCCAAAGTGGTTTAAGCTTTGATTATTATTCAGGTAAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(98-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.644

81.944

0.562
  endA Streptococcus pneumoniae D39

68.644

81.944

0.562
  endA Streptococcus pneumoniae R6

68.644

81.944

0.562
  endA Streptococcus pneumoniae TIGR4

68.644

81.944

0.562

Multiple sequence alignment