Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DQL23_RS09095 Genome accession   NZ_LS483341
Coordinates   1881897..1882736 (-) Length   279 a.a.
NCBI ID   WP_060554001.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1876897..1887736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS09075 (NCTC7865_01832) - 1878112..1879158 (+) 1047 WP_060553997.1 FecCD family ABC transporter permease -
  DQL23_RS09080 (NCTC7865_01833) - 1879160..1879915 (+) 756 WP_060553998.1 ABC transporter ATP-binding protein -
  DQL23_RS09085 (NCTC7865_01834) - 1879971..1880999 (+) 1029 WP_060553999.1 ABC transporter substrate-binding protein -
  DQL23_RS09090 (NCTC7865_01835) - 1880980..1881681 (+) 702 WP_060554000.1 alpha/beta hydrolase-fold protein -
  DQL23_RS09095 (NCTC7865_01836) endA 1881897..1882736 (-) 840 WP_060554001.1 DNA/RNA non-specific endonuclease Machinery gene
  DQL23_RS09100 (NCTC7865_01837) - 1882781..1882969 (-) 189 WP_020992673.1 DNA-directed RNA polymerase subunit beta -
  DQL23_RS09105 (NCTC7865_01838) murA 1882962..1884242 (-) 1281 WP_012000226.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQL23_RS09110 (NCTC7865_01839) - 1884280..1884513 (-) 234 WP_037622338.1 DUF1146 family protein -
  DQL23_RS09115 (NCTC7865_01840) tpiA 1884641..1885399 (-) 759 WP_060554002.1 triose-phosphate isomerase -
  DQL23_RS09120 (NCTC7865_01841) tuf 1885671..1886867 (-) 1197 WP_060554003.1 elongation factor Tu -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30845.53 Da        Isoelectric Point: 10.0496

>NTDB_id=1137502 DQL23_RS09095 WP_060554001.1 1881897..1882736(-) (endA) [Streptococcus gordonii strain NCTC7865]
MKKKQEEKLFQSIVGLILALVLIAGASYFSNHQNQDKIKSNSQVQRTGRRDISSPEQALSQSVLTDSVRKQLKGNIEWNQ
AGAYIINGNKTDLNADIASQPYAQNQTKSVQGQLVPIIGNALLSKQTRQYKNREETGNGTTSWVPAGWHQVRNLSGDFNH
AVDRGHLLAYSLVGGLKNFDASTSNPENIAVQTAWANQANSPSSTGQNFYESLIRKALDKKKRVRYRVTLIYANPDDLIA
VGSHLEAKSSDGSLEFNVFVPNIQTGIRINYRTGEVTVE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1137502 DQL23_RS09095 WP_060554001.1 1881897..1882736(-) (endA) [Streptococcus gordonii strain NCTC7865]
ATGAAGAAGAAACAAGAAGAGAAACTCTTTCAAAGTATAGTCGGACTGATTCTGGCACTTGTTCTGATAGCTGGTGCTAG
TTACTTCTCAAACCATCAGAATCAGGATAAGATAAAGTCTAATTCACAGGTTCAAAGAACAGGAAGAAGGGATATCTCAA
GTCCCGAGCAAGCACTATCTCAGAGTGTGCTGACTGATTCTGTTCGCAAGCAATTAAAAGGCAACATAGAATGGAATCAG
GCAGGTGCTTATATTATTAATGGCAACAAGACAGACCTGAATGCTGATATTGCCAGTCAGCCTTATGCACAAAATCAGAC
AAAGTCAGTTCAGGGACAGTTAGTACCAATAATTGGGAATGCTCTGCTTTCTAAACAGACTAGACAATACAAAAATCGAG
AAGAAACCGGAAACGGAACGACAAGTTGGGTTCCCGCCGGCTGGCATCAAGTGAGAAATCTTAGTGGAGATTTTAATCAT
GCTGTTGACCGAGGGCATTTATTAGCTTATTCTTTAGTCGGAGGCTTAAAGAACTTCGATGCTTCTACAAGTAACCCAGA
GAATATCGCTGTCCAAACAGCTTGGGCAAATCAGGCAAACAGTCCTTCATCTACTGGGCAAAATTTTTATGAAAGCTTGA
TTCGGAAGGCTTTGGATAAAAAGAAGCGAGTTCGTTATCGGGTAACCTTGATTTATGCTAATCCTGATGACCTGATAGCA
GTAGGATCTCATTTGGAAGCAAAGTCTAGCGATGGAAGTCTTGAGTTTAATGTCTTCGTTCCGAATATTCAAACCGGGAT
TCGTATCAACTATAGAACTGGAGAAGTAACAGTAGAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.556

80.645

0.545
  endA Streptococcus pneumoniae D39

67.556

80.645

0.545
  endA Streptococcus pneumoniae R6

67.556

80.645

0.545
  endA Streptococcus pneumoniae TIGR4

67.556

80.645

0.545

Multiple sequence alignment