Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   OB04_RS06280 Genome accession   NZ_CP009796
Coordinates   1184907..1185824 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179907..1190824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS06265 (OB04_01231) trpS 1180487..1181479 (-) 993 WP_038430004.1 tryptophan--tRNA ligase -
  OB04_RS06270 (OB04_01232) oppA 1182223..1183860 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  OB04_RS06275 (OB04_01233) oppB 1183968..1184903 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  OB04_RS06280 (OB04_01234) amiD 1184907..1185824 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  OB04_RS06285 (OB04_01235) oppD 1185829..1186905 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  OB04_RS06290 (OB04_01236) oppF 1186907..1187824 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  OB04_RS06295 (OB04_01237) yjbB 1187931..1189148 (+) 1218 WP_010886478.1 MFS transporter -
  OB04_RS06300 (OB04_01238) yjbC 1189313..1189891 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  OB04_RS06305 (OB04_01239) spx 1190072..1190467 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=113705 OB04_RS06280 WP_015252359.1 1184907..1185824(+) (amiD) [Bacillus subtilis strain SG6]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=113705 OB04_RS06280 WP_015252359.1 1184907..1185824(+) (amiD) [Bacillus subtilis strain SG6]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAAACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCGATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364