Detailed information NTG1136727

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQL47_RS01560
• Genome accession: NZ_LS483328
• Coordinates: 301659..302594 (+)
• Length: 311 a.a.
• NCBI ID: WP_012678543.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC12090
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 296659..307594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL47_RS01540 (NCTC12090_00306)	-	296819..298477 (+)	1659	WP_111689822.1	peptide ABC transporter substrate-binding protein	-
DQL47_RS01545 (NCTC12090_00307)	-	298646..299560 (+)	915	WP_012678546.1	ABC transporter permease	-
DQL47_RS01550 (NCTC12090_00308)	-	299570..300601 (+)	1032	WP_021320347.1	ABC transporter permease	-
DQL47_RS01555 (NCTC12090_00309)	oppD	300613..301659 (+)	1047	WP_111689823.1	ABC transporter ATP-binding protein	Regulator
DQL47_RS01560 (NCTC12090_00310)	amiF	301659..302594 (+)	936	WP_012678543.1	ABC transporter ATP-binding protein	Regulator
DQL47_RS01565 (NCTC12090_00311)	rnjA	303219..304901 (-)	1683	WP_012514941.1	ribonuclease J1	-
DQL47_RS01570 (NCTC12090_00312)	-	304903..305133 (-)	231	WP_012678542.1	DNA-dependent RNA polymerase subunit epsilon	-
DQL47_RS01575 (NCTC12090_00313)	tsaB	305419..306117 (+)	699	WP_012678541.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQL47_RS01580 (NCTC12090_00314)	rimI	306120..306545 (+)	426	WP_014622281.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQL47_RS01585 (NCTC12090_00315)	tsaD	306535..307551 (+)	1017	WP_012678539.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35027.15 Da
• Isoelectric Point: 8.3807

>NTDB_id=1136727 DQL47_RS01560 WP_012678543.1 301659..302594(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAEQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=1136727 DQL47_RS01560 WP_012678543.1 301659..302594(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTTAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCTGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTCTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGGACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACTCAGGCCGAAGCCGAGCAGTACCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.575	98.392	0.537
amiF	Streptococcus thermophilus LMG 18311	54.248	98.392	0.534
amiF	Streptococcus salivarius strain HSISS4	53.922	98.392	0.531