Detailed information NTG1136559

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQL35_RS01540
• Genome accession: NZ_LS483325
• Coordinates: 298783..299718 (+)
• Length: 311 a.a.
• NCBI ID: WP_111677723.1
• Uniprot ID: A0AAX2LIV6
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC7022
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 293783..304718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL35_RS01520 (NCTC7022_00304)	-	293944..295602 (+)	1659	WP_111677722.1	peptide ABC transporter substrate-binding protein	-
DQL35_RS01525 (NCTC7022_00305)	-	295769..296683 (+)	915	WP_012678546.1	ABC transporter permease	-
DQL35_RS01530 (NCTC7022_00306)	-	296693..297724 (+)	1032	WP_012678545.1	ABC transporter permease	-
DQL35_RS01535 (NCTC7022_00307)	oppD	297737..298783 (+)	1047	WP_012678544.1	ABC transporter ATP-binding protein	Regulator
DQL35_RS01540 (NCTC7022_00308)	amiF	298783..299718 (+)	936	WP_111677723.1	ABC transporter ATP-binding protein	Regulator
DQL35_RS01545 (NCTC7022_00309)	rnjA	300349..302031 (-)	1683	WP_012514941.1	ribonuclease J1	-
DQL35_RS01550 (NCTC7022_00310)	-	302033..302263 (-)	231	WP_012678542.1	DNA-dependent RNA polymerase subunit epsilon	-
DQL35_RS01555 (NCTC7022_00311)	tsaB	302549..303247 (+)	699	WP_014622280.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQL35_RS01560 (NCTC7022_00312)	rimI	303250..303675 (+)	426	WP_043030444.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQL35_RS01565 (NCTC7022_00313)	tsaD	303665..304681 (+)	1017	WP_038674573.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35071.16 Da
• Isoelectric Point: 7.6971

>NTDB_id=1136559 DQL35_RS01540 WP_111677723.1 298783..299718(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEADQYRAERDL

Nucleotide

• Length: 936 bp

>NTDB_id=1136559 DQL35_RS01540 WP_111677723.1 298783..299718(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAAGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGTGAGATTATTTTTAATGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTTAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCCGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACATGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCAGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACGCAGGCCGAAGCCGATCAGTACCGAGCAGAGCGTGACCTCTAA

Domains

Predicted by InterProScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.248	98.392	0.534
amiF	Streptococcus thermophilus LMG 18311	53.922	98.392	0.531
amiF	Streptococcus salivarius strain HSISS4	53.595	98.392	0.527