Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B7019_RS09740 Genome accession   NZ_CP006713
Coordinates   2233138..2235006 (-) Length   622 a.a.
NCBI ID   WP_025222255.1    Uniprot ID   -
Organism   Bifidobacterium breve JCM 7019     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2228138..2240006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7019_RS09725 (B7019_2009) - 2228703..2230121 (-) 1419 WP_025222253.1 MFS transporter -
  B7019_RS09730 (B7019_2010) - 2230226..2231167 (+) 942 WP_025222254.1 FAD:protein FMN transferase -
  B7019_RS09735 (B7019_2011) rcrQ 2231176..2233005 (-) 1830 WP_019727589.1 ABC transporter ATP-binding protein Regulator
  B7019_RS09740 (B7019_2012) rcrP 2233138..2235006 (-) 1869 WP_025222255.1 ABC transporter ATP-binding protein Regulator
  B7019_RS09745 (B7019_2013) - 2235190..2235711 (-) 522 WP_025222256.1 MarR family winged helix-turn-helix transcriptional regulator -
  B7019_RS09750 (B7019_2014) - 2236318..2237202 (-) 885 WP_180948949.1 hypothetical protein -
  B7019_RS11700 - 2237369..2237596 (+) 228 WP_065471115.1 transposase -
  B7019_RS11770 (B7019_2015) - 2237635..2238108 (+) 474 WP_257964016.1 helix-turn-helix domain-containing protein -
  B7019_RS11775 (B7019_2016) - 2238075..2238623 (+) 549 WP_268987486.1 transposase -
  B7019_RS09765 (B7019_2017) - 2238911..2239369 (-) 459 WP_230578277.1 sugar O-acetyltransferase -
  B7019_RS11705 - 2239410..2239562 (-) 153 WP_230578279.1 hypothetical protein -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68135.78 Da        Isoelectric Point: 5.1129

>NTDB_id=113626 B7019_RS09740 WP_025222255.1 2233138..2235006(-) (rcrP) [Bifidobacterium breve JCM 7019]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVACAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMAMVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFRNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDTVELADTSTPAGRKREALQLAADAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAE
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGIHKELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=113626 B7019_RS09740 WP_025222255.1 2233138..2235006(-) (rcrP) [Bifidobacterium breve JCM 7019]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACGCCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAAATGCTGCTGGTCTCGCTCGGCTCGGTCGCCTGCGCGATCATCACCGGTTACATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTGCGCTCGCTCGAATTCCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATCCTGCTGGTCGCTGTCGTAATCCTCATGGCGATGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCGAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACTGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCTCGTGCCGACGTGTCCGCGCAGCGCGTGATGGAAGTGCTCAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGACATCGCCAAGACCGGTCAGACCGGCACCGTGGAATTCAGGAACGT
GAGCTTCACCTACCCGGATTCGCGTGAGGCCATGCTGCAGGATATCAACTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTGTCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTACGTGCCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAACATCAGCTACGGCGACAAGCCCGGAGAGAACGACACGGTCGAACTCGCGGATA
CCTCCACTCCCGCCGGCCGTAAGCGTGAGGCGCTTCAGCTGGCCGCCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAGCAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCTGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCGAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGTACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTTGTGGGGCAAGGCATACACAAGGAGTTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-542)

ABC transporter transmembrane region (ABC_membrane)

(53-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.101

100

0.489

Multiple sequence alignment