Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DQM44_RS03795 Genome accession   NZ_LS483318
Coordinates   708608..709474 (+) Length   288 a.a.
NCBI ID   WP_003057428.1    Uniprot ID   A0AAE6NAQ1
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 703608..714474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS03770 (NCTC5370_00780) atpD 704644..706050 (+) 1407 WP_003057452.1 F0F1 ATP synthase subunit beta -
  DQM44_RS03775 (NCTC5370_00781) - 706063..706479 (+) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  DQM44_RS03780 (NCTC5370_00782) - 706808..707044 (+) 237 WP_274047614.1 DUF1146 family protein -
  DQM44_RS03785 (NCTC5370_00783) murA 707109..708380 (+) 1272 WP_015016870.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQM44_RS03790 (NCTC5370_00784) - 708384..708572 (+) 189 WP_003057490.1 DNA-directed RNA polymerase subunit beta -
  DQM44_RS03795 (NCTC5370_00785) endA 708608..709474 (+) 867 WP_003057428.1 DNA/RNA non-specific endonuclease Machinery gene
  DQM44_RS03800 (NCTC5370_00786) pheS 709757..710800 (+) 1044 WP_003061661.1 phenylalanine--tRNA ligase subunit alpha -
  DQM44_RS03805 (NCTC5370_00787) pheT 711010..713415 (+) 2406 WP_022554454.1 phenylalanine--tRNA ligase subunit beta -
  DQM44_RS03810 (NCTC5370_00788) - 713525..713902 (+) 378 WP_002993028.1 OsmC family protein -
  DQM44_RS03815 (NCTC5370_00789) - 713895..714281 (+) 387 WP_065354797.1 YbgA family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31917.94 Da        Isoelectric Point: 10.0750

>NTDB_id=1136201 DQM44_RS03795 WP_003057428.1 708608..709474(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVYSEVPTEALSASVLTKSIKEQ
LGSDIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1136201 DQM44_RS03795 WP_003057428.1 708608..709474(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTGACCAAATCCATTAAGGAACAA
TTAGGTTCCGATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGACCACGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTCGGTGGACTGAAAGG
TTTTGATGCATCTACCAGTAATCCTGATAACATTGCTACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGCTTAGTACGTCGTGCATTGGATAAGGGCAAAAGGGTACGTTATCGTGTTACCTTGCTT
TATGATGGTGATAACCTGTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGCTGACGGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5

Multiple sequence alignment