Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B7017_RS09150 Genome accession   NZ_CP006712
Coordinates   2165402..2167231 (-) Length   609 a.a.
NCBI ID   WP_014484404.1    Uniprot ID   -
Organism   Bifidobacterium breve JCM 7017     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2160402..2172231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7017_RS10240 - 2160792..2161139 (+) 348 WP_032734693.1 hypothetical protein -
  B7017_RS09130 (B7017_2044) rsmI 2161259..2162269 (-) 1011 WP_014484402.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B7017_RS09140 (B7017_2045) - 2162929..2164347 (-) 1419 WP_014484403.1 MFS transporter -
  B7017_RS09145 (B7017_2046) - 2164452..2165393 (+) 942 WP_003832382.1 FAD:protein FMN transferase -
  B7017_RS09150 (B7017_2047) rcrQ 2165402..2167231 (-) 1830 WP_014484404.1 ABC transporter ATP-binding protein Regulator
  B7017_RS09155 (B7017_2048) rcrP 2167363..2169231 (-) 1869 WP_014484405.1 ABC transporter ATP-binding protein Regulator
  B7017_RS09160 (B7017_2049) - 2169415..2169936 (-) 522 WP_019727591.1 MarR family winged helix-turn-helix transcriptional regulator -
  B7017_RS10245 - 2170562..2170774 (+) 213 WP_230454659.1 DUF1684 domain-containing protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66578.97 Da        Isoelectric Point: 5.9488

>NTDB_id=113618 B7017_RS09150 WP_014484404.1 2165402..2167231(-) (rcrQ) [Bifidobacterium breve JCM 7017]
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKVSQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISAC
KAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=113618 B7017_RS09150 WP_014484404.1 2165402..2167231(-) (rcrQ) [Bifidobacterium breve JCM 7017]
ATGCCAAGAGGACCTATGGGCCGCGGAGGTGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAACTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATCATCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCACGGCAAGCCGGTGCTCAACTCG
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
AAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCACAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGTTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCCCGCATCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACAACAACTG
GATCATGGCGCTGTGCGCAATCGGTTCAAGCATCATCGGCCTGATCATCATGATGGTCATTATGAAGGTCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAGGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCGGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAATTCGGCGTGATTGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTC
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGTC
GGAAATGGCTGACGAATCCGGCAAGCAGGCGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ACGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTGCTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATCTTTAATGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCAGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGAGAATTCGTCGCTGTC
CGCCGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTGCAGGACGCACCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTTGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATT
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCACGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGTTGCTGGCTGCTGGTGGCTTCTACGCTGATTTGTACAACAGCCAGTTCGCGTTGGCGGGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(387-534)

ABC transporter transmembrane region (ABC_membrane)

(37-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.675

96.059

0.516

Multiple sequence alignment