Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B12L_RS09225 Genome accession   NZ_CP006711
Coordinates   2126442..2128310 (-) Length   622 a.a.
NCBI ID   WP_025300109.1    Uniprot ID   -
Organism   Bifidobacterium breve 12L     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2121442..2133310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B12L_RS09210 (B12L_1770) - 2122008..2123426 (-) 1419 WP_025300106.1 MFS transporter -
  B12L_RS09215 (B12L_1771) - 2123531..2124472 (+) 942 WP_025300107.1 FAD:protein FMN transferase -
  B12L_RS09220 (B12L_1772) rcrQ 2124481..2126310 (-) 1830 WP_025300108.1 ABC transporter ATP-binding protein Regulator
  B12L_RS09225 (B12L_1773) rcrP 2126442..2128310 (-) 1869 WP_025300109.1 ABC transporter ATP-binding protein Regulator
  B12L_RS09230 (B12L_1774) - 2128494..2129015 (-) 522 WP_025300110.1 MarR family winged helix-turn-helix transcriptional regulator -
  B12L_RS09235 (B12L_02665) - 2129641..2129865 (+) 225 WP_230577554.1 DUF1684 domain-containing protein -
  B12L_RS09240 (B12L_1775) - 2129953..2131476 (-) 1524 WP_025263336.1 amino acid permease -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68196.88 Da        Isoelectric Point: 5.1129

>NTDB_id=113613 B12L_RS09225 WP_025300109.1 2126442..2128310(-) (rcrP) [Bifidobacterium breve 12L]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRMMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFKNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDTVELADTSTPAGRKREALQLAVDAANDGKLTDE
QMSRVKAAADVAQANEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAE
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHKELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=113613 B12L_RS09225 WP_025300109.1 2126442..2128310(-) (rcrP) [Bifidobacterium breve 12L]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACACCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAGATGCTGCTGGTCTCGCTCGGCTCGGTCTGCTGCGCCATCATCACCGGCTATATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTACGCTCGCTCGAATTTCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATTCTGCTGGTCGCTGTCGTGATCCTCATGGCACTGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCCAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATGATGGAAGTGTTGAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGACATCGCAAAGACCGGGCAGACCGGCACCGTGGAATTCAAGAACGT
GAGCTTCACCTACCCGGATTCGCGCGAGGCTATGCTGCAGGATATCAATTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTATCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTACGTGCCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAACATCAGCTACGGCGACAAGCCCGGAGAGAACGACACGGTCGAACTCGCGGATA
CCTCCACTCCCGCCGGCCGTAAGCGTGAGGCGCTTCAGCTGGCCGTCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAACGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAGCAGCGTCTGTCCATCGCCCGCGCCGTCTACCGCCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCTGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCGAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGTACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTCGTGGGGCAAGGCACACACAAGGAGTTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-542)

ABC transporter transmembrane region (ABC_membrane)

(53-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.576

100

0.494

Multiple sequence alignment