Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   NMK36_RS23630 Genome accession   NZ_LR882967
Coordinates   5460259..5461350 (-) Length   363 a.a.
NCBI ID   WP_072718203.1    Uniprot ID   A0A9W4CW17
Organism   Planktothrix pseudagardhii strain No.713     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5455259..5466350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK36_RS23610 (NO713_04730) - 5455433..5455717 (-) 285 WP_072718207.1 HU family DNA-binding protein -
  NMK36_RS23615 (NO713_04731) - 5455940..5458279 (-) 2340 WP_254174761.1 type IV pilus secretin family protein -
  NMK36_RS23620 (NO713_04733) - 5458585..5459382 (-) 798 WP_072718205.1 pilus assembly protein PilO -
  NMK36_RS23625 (NO713_04734) - 5459379..5460209 (-) 831 WP_072718204.1 PilN domain-containing protein -
  NMK36_RS23630 (NO713_04735) pilM 5460259..5461350 (-) 1092 WP_072718203.1 type IV pilus biogenesis protein PilM Machinery gene
  NMK36_RS23635 (NO713_04736) - 5461668..5464202 (-) 2535 WP_254174762.1 fimbria/pilus outer membrane usher protein -
  NMK36_RS23640 (NO713_04737) - 5464353..5465054 (-) 702 WP_254174763.1 molecular chaperone -
  NMK36_RS23645 (NO713_04738) - 5465151..5465675 (-) 525 WP_254174764.1 spore coat protein U domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39635.54 Da        Isoelectric Point: 4.1781

>NTDB_id=1132968 NMK36_RS23630 WP_072718203.1 5460259..5461350(-) (pilM) [Planktothrix pseudagardhii strain No.713]
MVSFLQGLFSKRKPGVGIELATERINLVEMRKKGQQLQLVTLATIPVPEGVVQDGQIVDTPAMAELIQAAITDNNIKAKT
VGTSIPGREAVTRIIPVPADLSDDELKEYMNAEAGLYLPFPREEADVDYQKLGRFVDEDGIEKVQVLLVAARKEVTDTYV
ETFAQAGLKVTVLEVSNFSLIRTLKNQLEQFSSTEAAIIADIEFDSTELAIVVDGIPQFNRTIPIGLYQVQSALNSAMNL
PPSRDVSELQAMTLPVTDTMGALNDPNPGTNAIIKVFAELADELRRSVDFYINQSDGLEMAQLLLMGPGAAIGQLDEFFM
QRLAMPATQVDPIESLSIAFEREIPPEQRASLGVALGLGMRML

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1132968 NMK36_RS23630 WP_072718203.1 5460259..5461350(-) (pilM) [Planktothrix pseudagardhii strain No.713]
ATGGTTAGTTTCTTACAAGGATTGTTCTCTAAGCGGAAGCCAGGAGTCGGAATTGAATTAGCCACAGAACGAATTAATCT
GGTGGAAATGCGGAAAAAAGGTCAGCAATTACAGCTAGTCACCTTGGCTACAATTCCAGTTCCCGAAGGCGTTGTTCAAG
ATGGCCAAATTGTAGATACTCCAGCAATGGCAGAGTTAATTCAGGCGGCAATTACCGATAACAATATTAAAGCCAAAACC
GTGGGTACATCTATTCCTGGACGGGAAGCAGTAACGCGGATTATTCCGGTTCCGGCTGACCTCAGTGATGATGAACTTAA
AGAGTATATGAACGCAGAAGCGGGATTATATTTACCATTTCCTAGGGAAGAAGCCGATGTAGATTATCAAAAATTAGGGC
GATTTGTCGATGAAGATGGCATCGAAAAAGTCCAAGTTTTATTAGTTGCTGCTCGTAAAGAAGTCACCGATACTTATGTT
GAAACCTTTGCTCAAGCGGGTTTAAAGGTTACGGTTTTAGAGGTGAGTAATTTTTCTCTAATTCGTACCCTAAAAAATCA
ATTAGAGCAGTTTTCCTCCACCGAAGCCGCTATTATTGCCGATATTGAATTTGATAGCACTGAACTGGCGATTGTTGTGG
ATGGGATTCCTCAATTTAACCGCACTATTCCCATTGGATTATATCAAGTTCAAAGTGCCTTAAACAGTGCCATGAATTTA
CCTCCTTCGAGGGATGTCAGCGAACTCCAGGCCATGACCCTTCCGGTGACTGATACAATGGGAGCATTAAACGATCCCAA
TCCGGGGACGAATGCCATCATTAAGGTTTTTGCTGAATTAGCCGATGAACTGCGTCGCTCCGTTGATTTTTATATTAATC
AAAGTGACGGTCTGGAAATGGCACAATTATTGTTAATGGGGCCAGGAGCCGCCATTGGACAACTGGATGAGTTTTTCATG
CAACGGTTAGCAATGCCTGCGACGCAAGTTGATCCCATTGAATCCCTCTCTATTGCCTTTGAACGGGAAATTCCCCCAGA
ACAACGTGCTAGTTTAGGAGTGGCATTAGGTTTAGGAATGCGGATGCTCTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

54.795

100

0.551

Multiple sequence alignment