Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   NMK38_RS14145 Genome accession   NZ_LR882934
Coordinates   3057954..3059045 (+) Length   363 a.a.
NCBI ID   WP_042154823.1    Uniprot ID   A0A1J1JFB7
Organism   Planktothrix agardhii strain NIVA-CYA126/8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3052954..3064045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK38_RS14125 (NIVACYA_02827) - 3052967..3053479 (+) 513 WP_042154830.1 hypothetical protein -
  NMK38_RS14130 (NIVACYA_02828) - 3053795..3054319 (+) 525 WP_144390468.1 spore coat protein U domain-containing protein -
  NMK38_RS14135 (NIVACYA_02829) - 3054379..3055140 (+) 762 WP_042154826.1 molecular chaperone -
  NMK38_RS14140 (NIVACYA_02830) - 3055231..3057765 (+) 2535 WP_042154824.1 fimbria/pilus outer membrane usher protein -
  NMK38_RS14145 (NIVACYA_02831) pilM 3057954..3059045 (+) 1092 WP_042154823.1 type IV pilus biogenesis protein PilM Machinery gene
  NMK38_RS14150 (NIVACYA_02832) - 3059090..3059929 (+) 840 WP_027249915.1 PilN domain-containing protein -
  NMK38_RS14155 (NIVACYA_02833) - 3059926..3060714 (+) 789 WP_042154821.1 pilus assembly protein PilO -
  NMK38_RS14160 (NIVACYA_02834) - 3060835..3063159 (+) 2325 WP_042154819.1 AMIN domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39594.45 Da        Isoelectric Point: 4.3029

>NTDB_id=1132868 NMK38_RS14145 WP_042154823.1 3057954..3059045(+) (pilM) [Planktothrix agardhii strain NIVA-CYA126/8]
MVSLLQGLFSKRKPGVGIELATERINLVELRKKGNQLKLVTLATTPVPEGIVQDGQIVDTPAMAELIQSTVTDNNIKAKT
VGTSIPGREAVTRIIPVPAELNDDELKEYMNAESGLYLPFPREEGDVDYQKLGRFVDEDGIEKVQVLLVATRKEVTDTYV
ETFAQAGLKVTVLEVSSFSLIRTLKHQLEQFSSTEAAIIADIQFDSTELAIVVNGIPQFNRAIPIGLFQVQSALNSAMNL
PPTRDISELQAMTLPVTDTMGALNDPNPGTNAIIKVFAELADELRRSVDFYINQSDGLEMAQLLLTGPGAAIGQLDEFFM
QRLAMPATQVDPIESLALAFEREIPPEQRASLGVALGLGMRMT

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1132868 NMK38_RS14145 WP_042154823.1 3057954..3059045(+) (pilM) [Planktothrix agardhii strain NIVA-CYA126/8]
ATGGTTAGTTTATTACAAGGATTGTTCTCCAAGCGGAAGCCAGGAGTCGGAATTGAATTAGCCACAGAGCGAATTAATCT
GGTGGAACTGCGGAAAAAAGGCAACCAATTAAAGTTAGTCACCTTAGCGACCACTCCGGTTCCCGAGGGCATTGTCCAAG
ATGGCCAAATTGTCGATACTCCAGCCATGGCGGAGTTAATTCAGTCCACTGTCACCGATAACAATATCAAAGCTAAGACC
GTTGGTACATCCATCCCCGGACGGGAAGCCGTAACCCGGATTATTCCGGTTCCCGCCGAACTCAATGACGACGAACTCAA
AGAATACATGAACGCCGAGTCGGGATTGTACCTCCCATTTCCCAGGGAAGAAGGAGACGTCGATTATCAAAAATTAGGGC
GATTTGTAGATGAGGATGGCATCGAAAAAGTACAGGTTTTATTAGTCGCCACCCGCAAAGAAGTGACGGATACCTATGTA
GAAACCTTTGCTCAAGCAGGTTTAAAAGTTACTGTATTAGAAGTTAGTAGTTTTTCTCTGATTCGTACCCTAAAACATCA
ACTTGAGCAGTTTTCCTCCACCGAAGCCGCGATTATTGCCGATATTCAATTTGATAGTACGGAATTGGCGATTGTTGTCA
ATGGCATTCCCCAGTTTAACCGCGCCATTCCTATTGGTCTGTTCCAAGTGCAAAGTGCCTTAAATAGTGCCATGAATTTA
CCTCCTACGAGGGATATCAGTGAATTACAGGCCATGACCCTTCCCGTGACTGATACAATGGGAGCATTAAACGATCCGAA
TCCCGGAACCAATGCCATCATTAAGGTTTTCGCTGAATTAGCCGATGAACTACGTCGCTCCGTTGACTTTTATATTAATC
AAAGTGATGGCTTAGAAATGGCGCAGTTACTATTAACTGGCCCCGGGGCTGCGATTGGACAACTCGATGAGTTTTTCATG
CAACGGTTGGCCATGCCTGCCACCCAAGTTGACCCGATTGAATCCCTCGCCCTTGCCTTTGAGCGGGAAATTCCCCCAGA
ACAACGTGCTAGTTTAGGAGTGGCATTAGGTTTAGGAATGCGAATGACCTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J1JFB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

54.521

100

0.548

Multiple sequence alignment