Detailed information
Bioinformatically predicted
Overview
| Name | amiF | Type | Regulator |
| Locus tag | H1X04_RS06535 | Genome accession | NZ_LR822043 |
| Coordinates | 1262413..1263342 (-) | Length | 309 a.a. |
| NCBI ID | WP_002951426.1 | Uniprot ID | A0A7U7CIU5 |
| Organism | Streptococcus thermophilus isolate STH_CIRM_2101 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1246879..1316968 | 1262413..1263342 | within | 0 |
Gene organization within MGE regions
Location: 1246879..1316968
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1X04_RS06460 (STHERMO_1419) | liaF | 1246887..1247585 (-) | 699 | WP_011226289.1 | cell wall-active antibiotics response protein LiaF | - |
| H1X04_RS09680 (STHERMO_1420) | - | 1247851..1248006 (-) | 156 | WP_011226290.1 | ion channel | - |
| H1X04_RS06470 (STHERMO_1423) | stkP/pknB | 1248643..1250514 (-) | 1872 | WP_011226292.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | Regulator |
| H1X04_RS06475 (STHERMO_1424) | - | 1250514..1251251 (-) | 738 | WP_002946881.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| H1X04_RS06480 (STHERMO_1425) | rsmB | 1251295..1252617 (-) | 1323 | WP_014608533.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| H1X04_RS06485 (STHERMO_1426) | fmt | 1252607..1253542 (-) | 936 | WP_002951411.1 | methionyl-tRNA formyltransferase | - |
| H1X04_RS06490 (STHERMO_1427) | - | 1253560..1255956 (-) | 2397 | WP_011226295.1 | primosomal protein N' | - |
| H1X04_RS06495 (STHERMO_1428) | rpoZ | 1256098..1256412 (-) | 315 | WP_002951415.1 | DNA-directed RNA polymerase subunit omega | - |
| H1X04_RS06500 (STHERMO_1429) | gmk | 1256434..1257063 (-) | 630 | WP_011226296.1 | guanylate kinase | - |
| H1X04_RS06505 (STHERMO_1430) | ftsY | 1257296..1258687 (-) | 1392 | WP_011226297.1 | signal recognition particle-docking protein FtsY | - |
| H1X04_RS06510 (STHERMO_1431) | - | 1258701..1259516 (-) | 816 | WP_011227405.1 | Cof-type HAD-IIB family hydrolase | - |
| H1X04_RS06515 (STHERMO_1432) | - | 1259509..1260303 (-) | 795 | WP_059257398.1 | HAD hydrolase family protein | - |
| H1X04_RS06520 (STHERMO_1433) | - | 1260486..1260863 (+) | 378 | WP_011226300.1 | GntR family transcriptional regulator | - |
| H1X04_RS06525 (STHERMO_1434) | - | 1260868..1261566 (+) | 699 | WP_011226301.1 | ABC transporter ATP-binding protein | - |
| H1X04_RS06530 (STHERMO_1435) | - | 1261578..1262363 (+) | 786 | WP_002951425.1 | hypothetical protein | - |
| H1X04_RS06535 (STHERMO_1436) | amiF | 1262413..1263342 (-) | 930 | WP_002951426.1 | ATP-binding cassette domain-containing protein | Regulator |
| H1X04_RS06540 (STHERMO_1437) | amiE | 1263335..1264420 (-) | 1086 | WP_011226304.1 | ABC transporter ATP-binding protein | Regulator |
| H1X04_RS06545 (STHERMO_1438) | amiD | 1264430..1265356 (-) | 927 | WP_002946409.1 | oligopeptide ABC transporter permease OppC | Regulator |
| H1X04_RS06550 (STHERMO_1439) | amiC | 1265356..1266849 (-) | 1494 | WP_011227407.1 | ABC transporter permease | Regulator |
| H1X04_RS06555 (STHERMO_1440) | amiA | 1266911..1268878 (-) | 1968 | WP_011225333.1 | peptide ABC transporter substrate-binding protein | Regulator |
| H1X04_RS09360 (STHERMO_1441) | - | 1269235..1270484 (+) | 1250 | Protein_1229 | ISL3 family transposase | - |
| H1X04_RS06565 (STHERMO_1442) | amiA3 | 1270529..1272502 (-) | 1974 | WP_011226306.1 | peptide ABC transporter substrate-binding protein | Regulator |
| H1X04_RS06570 | - | 1272706..1272896 (-) | 191 | Protein_1231 | IS3 family transposase | - |
| H1X04_RS06575 (STHERMO_1443) | - | 1272890..1273300 (-) | 411 | Protein_1232 | ATP-binding cassette domain-containing protein | - |
| H1X04_RS06580 | - | 1273332..1273646 (-) | 315 | Protein_1233 | TatD family hydrolase | - |
| H1X04_RS06585 (STHERMO_1445) | - | 1273996..1275201 (+) | 1206 | WP_011227415.1 | OFA family MFS transporter | - |
| H1X04_RS06590 | - | 1275247..1276598 (-) | 1352 | Protein_1235 | IS3 family transposase | - |
| H1X04_RS06595 (STHERMO_1450) | pta | 1276684..1277667 (-) | 984 | WP_011226315.1 | phosphate acetyltransferase | - |
| H1X04_RS06600 (STHERMO_1451) | - | 1277681..1278577 (-) | 897 | WP_011226316.1 | RluA family pseudouridine synthase | - |
| H1X04_RS06605 (STHERMO_1452) | - | 1278574..1279410 (-) | 837 | WP_041827075.1 | NAD kinase | - |
| H1X04_RS06610 (STHERMO_1453) | - | 1279382..1280056 (-) | 675 | WP_002951443.1 | GTP pyrophosphokinase family protein | - |
| H1X04_RS06615 (STHERMO_1454) | - | 1280152..1280727 (+) | 576 | WP_002951444.1 | CYTH domain-containing protein | - |
| H1X04_RS06620 (STHERMO_1455) | - | 1281092..1282063 (+) | 972 | WP_002951446.1 | ribose-phosphate diphosphokinase | - |
| H1X04_RS06625 (STHERMO_1456) | - | 1282067..1283179 (+) | 1113 | WP_002948029.1 | cysteine desulfurase family protein | - |
| H1X04_RS06630 (STHERMO_1457) | - | 1283181..1283528 (+) | 348 | WP_011226321.1 | DUF1831 domain-containing protein | - |
| H1X04_RS06635 (STHERMO_1458) | - | 1283673..1284332 (+) | 660 | WP_041828288.1 | redox-sensing transcriptional repressor Rex | - |
| H1X04_RS06640 (STHERMO_1459) | - | 1284325..1285020 (+) | 696 | WP_011226323.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| H1X04_RS06645 (STHERMO_1460) | radC | 1285073..1285759 (-) | 687 | WP_011226324.1 | RadC family protein | - |
| H1X04_RS06650 (STHERMO_1461) | - | 1285808..1287592 (-) | 1785 | WP_011226325.1 | rhamnan synthesis F family protein | - |
| H1X04_RS06655 (STHERMO_1462) | - | 1287589..1288644 (-) | 1056 | WP_002948022.1 | glycosyltransferase family 2 protein | - |
| H1X04_RS06660 (STHERMO_1463) | - | 1288664..1289869 (-) | 1206 | WP_011226326.1 | ABC transporter ATP-binding protein | - |
| H1X04_RS06665 (STHERMO_1464) | - | 1289869..1290678 (-) | 810 | WP_002948020.1 | ABC transporter permease | - |
| H1X04_RS06670 (STHERMO_1465) | - | 1290662..1291618 (-) | 957 | WP_011226328.1 | glycosyltransferase family 2 protein | - |
| H1X04_RS06675 (STHERMO_1466) | cps2T | 1291615..1292763 (-) | 1149 | WP_041828290.1 | beta 1-4 rhamnosyltransferase Cps2T | - |
| H1X04_RS06680 (STHERMO_1467) | - | 1292872..1293882 (-) | 1011 | WP_011226330.1 | glycosyltransferase family 2 protein | - |
| H1X04_RS06685 (STHERMO_1468) | - | 1293882..1295156 (-) | 1275 | WP_011226331.1 | lipopolysaccharide biosynthesis protein | - |
| H1X04_RS06690 (STHERMO_1469) | - | 1295149..1295481 (-) | 333 | WP_011226332.1 | DUF2304 domain-containing protein | - |
| H1X04_RS06695 (STHERMO_1470) | - | 1295487..1296182 (-) | 696 | WP_173940715.1 | glycosyltransferase family 2 protein | - |
| H1X04_RS06700 (STHERMO_1471) | rfbD | 1296259..1297110 (-) | 852 | WP_014621820.1 | dTDP-4-dehydrorhamnose reductase | - |
| H1X04_RS06705 (STHERMO_1472) | - | 1297187..1298521 (-) | 1335 | WP_041828293.1 | DUF6056 family protein | - |
| H1X04_RS06710 (STHERMO_1474) | - | 1298634..1299551 (-) | 918 | WP_002946425.1 | glycosyltransferase family 2 protein | - |
| H1X04_RS06715 (STHERMO_1475) | - | 1299614..1301029 (-) | 1416 | WP_096811580.1 | DUF2142 domain-containing protein | - |
| H1X04_RS06720 (STHERMO_1477) | - | 1301363..1301698 (-) | 336 | WP_002891474.1 | metal-sulfur cluster assembly factor | - |
| H1X04_RS06725 (STHERMO_1478) | rpoD | 1301752..1302861 (-) | 1110 | WP_011226338.1 | RNA polymerase sigma factor RpoD | - |
| H1X04_RS06730 (STHERMO_1479) | dnaG | 1302865..1304676 (-) | 1812 | WP_011226339.1 | DNA primase | - |
| H1X04_RS06735 (STHERMO_1480) | rpsU | 1305047..1305223 (-) | 177 | WP_011226340.1 | 30S ribosomal protein S21 | - |
| H1X04_RS06740 (STHERMO_1481) | - | 1305418..1306212 (-) | 795 | WP_011226341.1 | transporter substrate-binding domain-containing protein | - |
| H1X04_RS06745 (STHERMO_1482) | - | 1306305..1307414 (-) | 1110 | WP_041828295.1 | aminotransferase | - |
| H1X04_RS06750 (STHERMO_1483) | - | 1307761..1308558 (-) | 798 | WP_011226343.1 | transporter substrate-binding domain-containing protein | - |
| H1X04_RS06755 (STHERMO_1484) | - | 1308555..1309385 (-) | 831 | WP_041828297.1 | transporter substrate-binding domain-containing protein | - |
| H1X04_RS06760 (STHERMO_1485) | - | 1309598..1310062 (-) | 465 | WP_011226345.1 | 8-oxo-dGTP diphosphatase | - |
| H1X04_RS06765 (STHERMO_1486) | uvrB | 1310107..1312098 (-) | 1992 | WP_002953358.1 | excinuclease ABC subunit UvrB | - |
| H1X04_RS09970 | - | 1312785..1313721 (-) | 937 | Protein_1271 | CPBP family intramembrane glutamic endopeptidase | - |
| H1X04_RS06775 (STHERMO_1491) | - | 1313920..1316130 (+) | 2211 | WP_011226350.1 | ABC transporter substrate-binding protein/permease | - |
| H1X04_RS06780 (STHERMO_1492) | - | 1316130..1316870 (+) | 741 | WP_002945131.1 | amino acid ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 309 a.a. Molecular weight: 35171.28 Da Isoelectric Point: 6.5989
>NTDB_id=1132188 H1X04_RS06535 WP_002951426.1 1262413..1263342(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_2101]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK
Nucleotide
Download Length: 930 bp
>NTDB_id=1132188 H1X04_RS06535 WP_002951426.1 1262413..1263342(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_2101]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| amiF | Streptococcus thermophilus LMG 18311 |
100 |
100 |
1 |
| amiF | Streptococcus thermophilus LMD-9 |
99.676 |
100 |
0.997 |
| amiF | Streptococcus salivarius strain HSISS4 |
98.058 |
100 |
0.981 |