Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H1W87_RS01045 Genome accession   NZ_LR822037
Coordinates   181340..182278 (+) Length   312 a.a.
NCBI ID   WP_180478345.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 176340..187278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS01025 - 177938..179017 (+) 1080 Protein_147 peptide ABC transporter substrate-binding protein -
  H1W87_RS01030 (STHERMO_0191) - 179019..179237 (+) 219 Protein_148 ABC transporter permease subunit -
  H1W87_RS01035 - 179248..180284 (+) 1037 Protein_149 ABC transporter permease -
  H1W87_RS01040 - 180298..181317 (+) 1020 Protein_150 ABC transporter ATP-binding protein -
  H1W87_RS01045 (STHERMO_0201) amiF 181340..182278 (+) 939 WP_180478345.1 ABC transporter ATP-binding protein Regulator
  H1W87_RS09405 (STHERMO_0203) - 182500..182688 (+) 189 WP_011225379.1 hypothetical protein -
  H1W87_RS01055 (STHERMO_0204) hslO 182835..183701 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  H1W87_RS01060 (STHERMO_0205) dusB 183694..184671 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  H1W87_RS01065 (STHERMO_0206) - 184874..185737 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -
  H1W87_RS09410 (STHERMO_0207) - 186007..186795 (+) 789 WP_232088852.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35345.02 Da        Isoelectric Point: 6.1921

>NTDB_id=1131864 H1W87_RS01045 WP_180478345.1 181340..182278(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1121]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRFVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKIDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIVLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGSADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1131864 H1W87_RS01045 WP_180478345.1 181340..182278(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATTTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGATAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGTTTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGGATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTCCTTGAAGTGGGATCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.443

97.756

0.522
  amiF Streptococcus thermophilus LMG 18311

53.115

97.756

0.519
  amiF Streptococcus salivarius strain HSISS4

52.787

97.756

0.516

Multiple sequence alignment