Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H1X13_RS00990 Genome accession   NZ_LR822034
Coordinates   175334..176272 (+) Length   312 a.a.
NCBI ID   WP_011226817.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1049     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 170334..181272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X13_RS00970 (STHERMO_0191) - 172002..173014 (+) 1013 Protein_149 peptide ABC transporter substrate-binding protein -
  H1X13_RS00975 (STHERMO_0192) - 173016..173234 (+) 219 Protein_150 ABC transporter permease subunit -
  H1X13_RS00980 - 173245..174276 (+) 1032 Protein_151 ABC transporter permease -
  H1X13_RS00985 - 174290..175332 (+) 1043 Protein_152 ABC transporter ATP-binding protein -
  H1X13_RS00990 (STHERMO_0200) amiF 175334..176272 (+) 939 WP_011226817.1 ABC transporter ATP-binding protein Regulator
  H1X13_RS00995 (STHERMO_0202) - 176494..176748 (+) 255 WP_224103662.1 hypothetical protein -
  H1X13_RS01000 (STHERMO_0203) hslO 176829..177695 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  H1X13_RS01005 (STHERMO_0204) dusB 177688..178665 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  H1X13_RS01010 (STHERMO_0205) - 178868..179731 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35298.86 Da        Isoelectric Point: 6.0546

>NTDB_id=1131683 H1X13_RS00990 WP_011226817.1 175334..176272(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1049]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1131683 H1X13_RS00990 WP_011226817.1 175334..176272(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1049]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.443

97.756

0.522
  amiF Streptococcus thermophilus LMG 18311

53.115

97.756

0.519
  amiF Streptococcus salivarius strain HSISS4

52.787

97.756

0.516

Multiple sequence alignment