Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H1W74_RS00995 Genome accession   NZ_LR822031
Coordinates   176831..177769 (+) Length   312 a.a.
NCBI ID   WP_022096535.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1047     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 171831..182769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W74_RS00975 (STHERMO_0190) - 173492..174499 (+) 1008 Protein_152 peptide ABC transporter substrate-binding protein -
  H1W74_RS00980 (STHERMO_0191) - 174507..174725 (+) 219 Protein_153 ABC transporter permease subunit -
  H1W74_RS00985 - 174736..175770 (+) 1035 Protein_154 ABC transporter permease -
  H1W74_RS00990 - 175784..176829 (+) 1046 Protein_155 ABC transporter ATP-binding protein -
  H1W74_RS00995 (STHERMO_0198) amiF 176831..177769 (+) 939 WP_022096535.1 ABC transporter ATP-binding protein Regulator
  H1W74_RS09500 (STHERMO_0200) - 177991..178179 (+) 189 WP_011225379.1 hypothetical protein -
  H1W74_RS01005 (STHERMO_0201) hslO 178326..179192 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  H1W74_RS01010 (STHERMO_0202) dusB 179185..180162 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  H1W74_RS01015 (STHERMO_0203) - 180365..181228 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35217.75 Da        Isoelectric Point: 6.0530

>NTDB_id=1131503 H1W74_RS00995 WP_022096535.1 176831..177769(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1047]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKPSDIDSGTVTFSGNGISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEHEAKVKELIDLVGLNEDHLSRYPYEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1131503 H1W74_RS00995 WP_022096535.1 176831..177769(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1047]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACCTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGGGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCATGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTTATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

52.459

97.756

0.513
  amiF Streptococcus thermophilus LMG 18311

52.131

97.756

0.51
  amiF Streptococcus salivarius strain HSISS4

51.803

97.756

0.506

Multiple sequence alignment