Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H0514_RS07875 Genome accession   NZ_LR822020
Coordinates   1534003..1535817 (-) Length   604 a.a.
NCBI ID   WP_179972687.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_956     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1529003..1540817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0514_RS11310 - 1529922..1530047 (-) 126 WP_269473098.1 hypothetical protein -
  H0514_RS07855 - 1530060..1530738 (-) 679 Protein_1515 response regulator transcription factor -
  H0514_RS07860 - 1530791..1531364 (-) 574 Protein_1516 GTP pyrophosphokinase -
  H0514_RS07865 (STHERMO_1818) - 1531641..1532078 (-) 438 WP_232086205.1 GNAT family acetyltransferase -
  H0514_RS07870 (STHERMO_1819) rcrQ 1532235..1534013 (-) 1779 WP_179972688.1 ABC transporter ATP-binding protein Regulator
  H0514_RS07875 (STHERMO_1820) rcrP 1534003..1535817 (-) 1815 WP_179972687.1 ABC transporter ATP-binding protein Regulator
  H0514_RS07880 (STHERMO_1821) rcrR 1535821..1536264 (-) 444 WP_179972686.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0514_RS07885 (STHERMO_1822) - 1536454..1536864 (-) 411 WP_100285038.1 peptide deformylase -
  H0514_RS07890 (STHERMO_1823) gdhA 1537122..1538474 (-) 1353 WP_179973206.1 NADP-specific glutamate dehydrogenase -
  H0514_RS07895 - 1538902..1539893 (+) 992 Protein_1523 AAA family ATPase -
  H0514_RS07900 (STHERMO_1826) - 1539957..1540718 (+) 762 WP_179972684.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67151.85 Da        Isoelectric Point: 5.7774

>NTDB_id=1131105 H0514_RS07875 WP_179972687.1 1534003..1535817(-) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_956]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDTPGMRMLLMSFAGFMASVVV
SFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQLVLTMGLQVITQGPIMAIWAITKIADKNG
NWLIALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIASAMEDKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPEYSSEKPKEVGTVEFEDVSFRYSETSEPVLEHVSFKAKKGDTVALIGSTGSGKSTLVN
LIPRFYDVTQGTIKVDGVDVRYYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNTPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAKKTQDMTKLIVAQRISTIMDA
DQILVLDNGKVVGQGTHEELLANNEVYQEIAYSQLPKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1131105 H0514_RS07875 WP_179972687.1 1534003..1535817(-) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGTTTAAAATTTTTAAACGTTTGACGGCAAAAGAGTTAAGTATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTACAACCCTCTTATCAACCAAGGGGACTAAGGCGTCGGATA
TTTTTGCTTGGAATACGGATACCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGCTTTATGGCCTCTGTCGTGGTT
AGTTTTCTAGCTGCCAGAACAGCAGCTAGTTTTACTACTCGTCTTCGTGATGATATCTTCCATCAGGTTTTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACTCGTACGACAAACGATATTACACAATTACAGCTGGTAC
TGACCATGGGATTACAGGTTATTACACAGGGACCTATTATGGCAATCTGGGCTATTACAAAGATTGCTGATAAAAATGGG
AATTGGCTTATTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTTATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGTTTGATTCAGACTCTGACAGATAAACTCAATAGTGTGACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCCGAGAGTTATCAAGAGGATAAGTTTGAAAAGGCCAATACTGATCTAACCCAAAACAATCTTTTCATCGGT
CGTTCTTTTGCCTTGCTGACACCGGTAATGACTGCTGTATCTAGTGGTTTGACGCTAGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACCGATCCAACTAAGATTGCTAGTGCCATGGAAGACAAGGTTCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTTGTCTTCTTCCTTCTTCCA
CGAGCAGTTGTAGCAGCTGGACGTATCAATGAAGTTTTAGATACTCAATCTTCAGTTTCTTACCCTGAATATAGTTCTGA
AAAGCCTAAAGAAGTCGGAACTGTTGAATTTGAAGACGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGAGATACGGTTGCTCTTATTGGTTCGACTGGATCTGGTAAATCAACTCTTGTCAAC
CTTATCCCACGTTTTTACGATGTAACGCAAGGAACTATCAAGGTCGATGGTGTAGATGTGAGATATTACGATCACGAAAC
CTTGCACAATATTGTTGGTTATATCCCACAAAAGGCAGTACTTTTCTCAGGGGACATCACGTCAAATATGACGATGGGAA
CCAGCAATAACACCCCTCTTGATGACGCTAAAATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAAGTGGCTCAAGCTGGGTCTAACTTCTCAGGTGGTCAGAAACAACGTCTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATCTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCGATCGCAAAT
TGCGTCAAGAATTGGCTAAAAAAACACAAGATATGACCAAGTTGATTGTTGCGCAACGCATTTCTACTATTATGGATGCT
GACCAAATCTTAGTTCTTGATAATGGTAAGGTCGTTGGTCAAGGAACCCACGAGGAACTCTTGGCTAACAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGCCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.769

100

0.679

Multiple sequence alignment