Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H0510_RS01065 Genome accession   NZ_LR822019
Coordinates   183114..184052 (+) Length   312 a.a.
NCBI ID   WP_179966889.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 178114..189052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS01045 - 179780..180793 (+) 1014 Protein_152 peptide ABC transporter substrate-binding protein -
  H0510_RS01050 (STHERMO_0193) - 180795..181013 (+) 219 Protein_153 ABC transporter permease subunit -
  H0510_RS01055 - 181024..182056 (+) 1033 Protein_154 ABC transporter permease -
  H0510_RS01060 - 182070..183112 (+) 1043 Protein_155 ABC transporter ATP-binding protein -
  H0510_RS01065 (STHERMO_0201) amiF 183114..184052 (+) 939 WP_179966889.1 ABC transporter ATP-binding protein Regulator
  H0510_RS09330 (STHERMO_0203) - 184274..184462 (+) 189 WP_232086667.1 hypothetical protein -
  H0510_RS01075 (STHERMO_0204) hslO 184609..185475 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  H0510_RS01080 (STHERMO_0205) dusB 185468..186445 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  H0510_RS01085 (STHERMO_0206) - 186648..187511 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35354.92 Da        Isoelectric Point: 5.9381

>NTDB_id=1131006 H0510_RS01065 WP_179966889.1 183114..184052(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_772]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLTKSKEEREAKVKELIDLVGLNEDHLSRYPYEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1131006 H0510_RS01065 WP_179966889.1 183114..184052(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGACTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTTATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTAGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.115

97.756

0.519
  amiF Streptococcus thermophilus LMG 18311

52.787

97.756

0.516
  amiF Streptococcus salivarius strain HSISS4

52.459

97.756

0.513

Multiple sequence alignment