Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H0506_RS06535 Genome accession   NZ_LR822015
Coordinates   1261740..1262669 (-) Length   309 a.a.
NCBI ID   WP_002951426.1    Uniprot ID   A0A7U7CIU5
Organism   Streptococcus thermophilus isolate STH_CIRM_65     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256740..1267669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0506_RS06510 (STHERMO_1444) - 1258028..1258843 (-) 816 WP_011227405.1 Cof-type HAD-IIB family hydrolase -
  H0506_RS06515 (STHERMO_1445) - 1258836..1259630 (-) 795 WP_059257398.1 HAD hydrolase family protein -
  H0506_RS06520 (STHERMO_1446) - 1259813..1260190 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  H0506_RS06525 (STHERMO_1447) - 1260195..1260893 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  H0506_RS06530 (STHERMO_1448) - 1260905..1261690 (+) 786 WP_002951425.1 hypothetical protein -
  H0506_RS06535 (STHERMO_1449) amiF 1261740..1262669 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H0506_RS06540 (STHERMO_1450) amiE 1262662..1263747 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H0506_RS06545 (STHERMO_1451) amiD 1263757..1264683 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0506_RS06550 (STHERMO_1452) amiC 1264683..1266176 (-) 1494 WP_011227407.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35171.28 Da        Isoelectric Point: 6.5989

>NTDB_id=1130916 H0506_RS06535 WP_002951426.1 1261740..1262669(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_65]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1130916 H0506_RS06535 WP_002951426.1 1261740..1262669(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_65]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

100

100

1
  amiF Streptococcus thermophilus LMD-9

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981

Multiple sequence alignment