Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H0505_RS01050 Genome accession   NZ_LR822012
Coordinates   183238..184176 (+) Length   312 a.a.
NCBI ID   WP_179971150.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 178238..189176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS01030 (STHERMO_0185) - 179905..180917 (+) 1013 Protein_151 peptide ABC transporter substrate-binding protein -
  H0505_RS01035 (STHERMO_0186) - 180919..181137 (+) 219 Protein_152 ABC transporter permease subunit -
  H0505_RS01040 - 181148..182181 (+) 1034 Protein_153 ABC transporter permease -
  H0505_RS01045 - 182195..183218 (+) 1024 Protein_154 ABC transporter ATP-binding protein -
  H0505_RS01050 (STHERMO_0195) amiF 183238..184176 (+) 939 WP_179971150.1 ABC transporter ATP-binding protein Regulator
  H0505_RS01055 (STHERMO_0197) - 184398..184652 (+) 255 WP_011226818.1 hypothetical protein -
  H0505_RS01060 (STHERMO_0198) hslO 184733..185599 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  H0505_RS01065 (STHERMO_0199) dusB 185592..186569 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  H0505_RS01070 (STHERMO_0200) - 186772..187635 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35241.86 Da        Isoelectric Point: 6.4461

>NTDB_id=1130711 H0505_RS01050 WP_179971150.1 183238..184176(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_30]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNGISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGISRALAVNHHFIVADKPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1130711 H0505_RS01050 WP_179971150.1 183238..184176(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGGGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTTCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACAAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

52.787

97.756

0.516
  amiF Streptococcus thermophilus LMG 18311

52.459

97.756

0.513
  amiF Streptococcus salivarius strain HSISS4

52.131

97.756

0.51

Multiple sequence alignment