Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H0504_RS07995 Genome accession   NZ_LR822011
Coordinates   1560047..1560985 (-) Length   312 a.a.
NCBI ID   WP_011225378.1    Uniprot ID   Q5M692
Organism   Streptococcus thermophilus isolate STH_CIRM_23     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555047..1565985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0504_RS07975 (STHERMO_1784) - 1556588..1557451 (-) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -
  H0504_RS07980 (STHERMO_1785) dusB 1557654..1558631 (-) 978 WP_041828115.1 tRNA dihydrouridine synthase DusB -
  H0504_RS07985 (STHERMO_1786) hslO 1558624..1559490 (-) 867 WP_041828113.1 Hsp33 family molecular chaperone HslO -
  H0504_RS09815 (STHERMO_1787) - 1559637..1559825 (-) 189 WP_011225379.1 hypothetical protein -
  H0504_RS07995 (STHERMO_1789) amiF 1560047..1560985 (-) 939 WP_011225378.1 ABC transporter ATP-binding protein Regulator
  H0504_RS08000 - 1560987..1562029 (-) 1043 Protein_1543 ABC transporter ATP-binding protein -
  H0504_RS08005 - 1562043..1563077 (-) 1035 Protein_1544 ABC transporter permease -
  H0504_RS08010 (STHERMO_1797) - 1563088..1563306 (-) 219 Protein_1545 ABC transporter permease subunit -
  H0504_RS08015 (STHERMO_1798) - 1563308..1564322 (-) 1015 Protein_1546 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35309.84 Da        Isoelectric Point: 6.0186

>NTDB_id=1130689 H0504_RS07995 WP_011225378.1 1560047..1560985(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_23]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSSTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKHQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1130689 H0504_RS07995 WP_011225378.1 1560047..1560985(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_23]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGAGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCACGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCATCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M692

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.115

97.756

0.519
  amiF Streptococcus thermophilus LMG 18311

52.787

97.756

0.516
  amiF Streptococcus salivarius strain HSISS4

52.459

97.756

0.513

Multiple sequence alignment