Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STHERMO_RS01105 Genome accession   NZ_LR822006
Coordinates   192955..193893 (+) Length   312 a.a.
NCBI ID   WP_011226817.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 187955..198893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STHERMO_RS01085 (STHERMO_0205) - 189620..190633 (+) 1014 Protein_163 peptide ABC transporter substrate-binding protein -
  STHERMO_RS01090 (STHERMO_0206) - 190635..190853 (+) 219 Protein_164 ABC transporter permease subunit -
  STHERMO_RS01095 - 190864..191897 (+) 1034 Protein_165 ABC transporter permease -
  STHERMO_RS01100 - 191911..192932 (+) 1022 Protein_166 ABC transporter ATP-binding protein -
  STHERMO_RS01105 (STHERMO_0214) amiF 192955..193893 (+) 939 WP_011226817.1 ABC transporter ATP-binding protein Regulator
  STHERMO_RS01110 (STHERMO_0215) - 194117..194371 (+) 255 WP_011226818.1 hypothetical protein -
  STHERMO_RS01115 (STHERMO_0216) hslO 194452..195318 (+) 867 WP_041826953.1 Hsp33 family molecular chaperone HslO -
  STHERMO_RS01120 (STHERMO_0217) dusB 195311..196288 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  STHERMO_RS01125 (STHERMO_0218) - 196491..197354 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35298.86 Da        Isoelectric Point: 6.0546

>NTDB_id=1130424 STHERMO_RS01105 WP_011226817.1 192955..193893(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_16]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1130424 STHERMO_RS01105 WP_011226817.1 192955..193893(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_16]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.443

97.756

0.522
  amiF Streptococcus thermophilus LMG 18311

53.115

97.756

0.519
  amiF Streptococcus salivarius strain HSISS4

52.787

97.756

0.516

Multiple sequence alignment