Detailed information NTG0113011

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BAMY6639_RS18850
• Genome accession: NZ_CP006058
• Coordinates: 3867859..3868638 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3862859..3873638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS18830 (BAMY6639_19740)	trmFO	3863546..3864853 (+)	1308	WP_029973471.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BAMY6639_RS18835 (BAMY6639_19745)	xerC	3864923..3865840 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
BAMY6639_RS18840 (BAMY6639_19750)	hslV	3865856..3866401 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
BAMY6639_RS18845 (BAMY6639_19755)	hslU	3866418..3867821 (+)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
BAMY6639_RS18850 (BAMY6639_19760)	codY	3867859..3868638 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BAMY6639_RS18855 (BAMY6639_19765)	flgB	3868992..3869381 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
BAMY6639_RS18860 (BAMY6639_19770)	flgC	3869381..3869833 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
BAMY6639_RS18865 (BAMY6639_19775)	fliE	3869844..3870164 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BAMY6639_RS18870 (BAMY6639_19780)	fliF	3870207..3871817 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
BAMY6639_RS18875 (BAMY6639_19785)	fliG	3871830..3872846 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
BAMY6639_RS18880 (BAMY6639_19790)	fliH	3872839..3873594 (+)	756	WP_061861457.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=113011 BAMY6639_RS18850 WP_003154263.1 3867859..3868638(+) (codY) [Bacillus amyloliquefaciens UMAF6639]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=113011 BAMY6639_RS18850 WP_003154263.1 3867859..3868638(+) (codY) [Bacillus amyloliquefaciens UMAF6639]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTTAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471