Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   G6Q10_RS03630 Genome accession   NZ_LR760298
Coordinates   732205..734595 (+) Length   796 a.a.
NCBI ID   WP_163652968.1    Uniprot ID   -
Organism   Listeria sp. PSOL-1 strain Marseille-P4284     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 727205..739595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Q10_RS03605 - 727743..728693 (+) 951 WP_163652957.1 hypothetical protein -
  G6Q10_RS03615 - 729083..730228 (+) 1146 WP_163652960.1 cysteine desulfurase family protein -
  G6Q10_RS03620 mnmA 730246..731361 (+) 1116 WP_163652963.1 tRNA 2-thiouridine(34) synthase MnmA -
  G6Q10_RS03625 - 731517..732185 (+) 669 WP_163652965.1 tetratricopeptide repeat protein -
  G6Q10_RS03630 recD2 732205..734595 (+) 2391 WP_163652968.1 ATP-dependent RecD-like DNA helicase Machinery gene
  G6Q10_RS03635 alaS 734921..737554 (+) 2634 WP_163655708.1 alanine--tRNA ligase -
  G6Q10_RS03640 - 737644..737916 (+) 273 WP_163652971.1 IreB family regulatory phosphoprotein -
  G6Q10_RS03645 ruvX 737913..738329 (+) 417 WP_163652974.1 Holliday junction resolvase RuvX -
  G6Q10_RS03650 - 738345..738638 (+) 294 WP_163652977.1 DUF1292 domain-containing protein -
  G6Q10_RS03655 - 738686..739318 (-) 633 WP_163652980.1 DedA family protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90491.64 Da        Isoelectric Point: 5.0996

>NTDB_id=1129895 G6Q10_RS03630 WP_163652968.1 732205..734595(+) (recD2) [Listeria sp. PSOL-1 strain Marseille-P4284]
MEEQGSFQLFEQKNEELYMKGTVLSTIFHNAENLFSVVRIAVTDTNTDWQEKDIIVTGFFPKLLEQEVYQFFGIMQEHAK
FGQQFKAEKFHKEMPKSKQAMINYLSGELFKGIGKKTAEAIVETIGEDAISRVLENPSLLSQVPKLPKKAAETLVETLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQDALDILEKNPYRLIEDVKGVGFQRADELGRKLGIEGDHPMRLRAAIIYCL
DVESLKQGDVYLEKDELLNYAKQLLEQSAPIQIENESIKRELAALQEEEKLIIENTRVYMPSLYFAENGLTHHLKRIMKQ
TEYAEEFPESEFLLALGELEERLGVTYGSSQKDALKDALMSPMLVLTGGPGTGKTTVIRGIVELYSELNGVSLDPHSYKG
EEKMPILLAAPTGRAAKRMSESTGLPATTIHRLLGMNGQEALDDDAERTVDGRMLIVDEMSMVDTWLANQLFRALPNHMQ
VILVGDQDQLPSVGPGQVLKDILKAKIIPTVELTDIYRQKDGSSIIEMAHHIKGGFLPNNFAENSADRSFFHCHANQIAD
VVEQVVKNAREKGFRARDIQVLAPMYRGPAGINVLNRNLQEIFNPNESGKRKEIVFGDIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSLMYARENTEKQDMIVVKFDQTEVTYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKRFLILCGEEDAFRMGVERTAETSRKTTLYERLLSEEELEQMSNKKTLTEENISSIDPMIGMDGISPYQFME

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=1129895 G6Q10_RS03630 WP_163652968.1 732205..734595(+) (recD2) [Listeria sp. PSOL-1 strain Marseille-P4284]
ATGGAAGAGCAAGGTTCGTTTCAGTTATTTGAACAAAAAAATGAAGAATTATATATGAAGGGAACAGTGCTTTCAACCAT
TTTTCATAACGCTGAGAACCTTTTTTCTGTAGTGAGAATTGCTGTTACAGATACCAATACAGACTGGCAAGAAAAAGATA
TTATCGTAACTGGTTTTTTCCCAAAACTCTTAGAACAAGAAGTTTACCAGTTTTTTGGAATCATGCAGGAGCATGCGAAG
TTTGGCCAGCAATTTAAAGCCGAAAAATTTCATAAAGAAATGCCAAAATCAAAGCAAGCAATGATTAATTATTTATCAGG
CGAGCTTTTTAAGGGGATTGGTAAAAAAACAGCGGAAGCCATTGTTGAAACCATTGGTGAAGACGCGATTAGTAGAGTAC
TTGAAAATCCTAGTTTGTTAAGTCAAGTCCCAAAACTCCCTAAAAAAGCTGCAGAAACACTTGTTGAAACATTACGAGAA
AATCAAGGACTAGAACACGTGATGGTTGGTCTTAATGAATATGGCTTTGGACCACAACTTTCAATGAAAATTTTTCAAGT
TTATAAACAAGATGCTTTAGATATACTCGAAAAAAACCCTTATCGCCTAATTGAAGATGTCAAAGGTGTCGGTTTCCAAC
GAGCGGACGAACTTGGACGAAAGCTTGGGATTGAAGGAGACCATCCTATGCGGTTACGTGCAGCGATTATTTATTGCTTG
GATGTGGAGTCTTTAAAACAAGGTGATGTTTACTTGGAAAAGGACGAACTTCTAAACTATGCGAAACAACTCCTTGAACA
AAGTGCACCAATTCAAATCGAAAACGAAAGCATCAAACGTGAACTTGCCGCACTTCAAGAAGAAGAAAAGCTAATCATTG
AAAATACGCGTGTTTACATGCCATCCCTTTATTTTGCTGAAAATGGTTTAACCCATCATTTAAAAAGAATCATGAAGCAA
ACAGAATACGCGGAAGAGTTCCCTGAATCCGAATTCTTATTAGCTCTTGGTGAGCTTGAAGAACGTCTAGGTGTGACGTA
TGGCTCATCGCAAAAAGATGCCTTAAAAGATGCGCTTATGTCACCGATGCTTGTTTTAACTGGTGGACCTGGAACGGGGA
AAACGACAGTGATTAGAGGCATCGTTGAACTTTATAGCGAGTTAAATGGGGTTAGCTTAGATCCACATTCCTATAAAGGC
GAAGAAAAGATGCCAATCCTACTTGCTGCTCCAACTGGACGTGCAGCTAAGCGAATGAGTGAGTCAACAGGTCTTCCAGC
AACTACCATTCATCGTTTGCTAGGTATGAATGGACAAGAAGCACTTGATGATGACGCTGAGCGCACTGTAGATGGACGAA
TGCTTATTGTTGATGAAATGTCAATGGTTGACACATGGCTTGCGAATCAGTTGTTCCGTGCTTTACCAAATCACATGCAA
GTTATTTTAGTAGGAGACCAAGATCAGCTTCCTTCTGTTGGCCCTGGACAAGTGTTAAAAGATATCTTGAAGGCGAAAAT
CATTCCAACTGTTGAGTTAACTGATATTTATCGTCAAAAAGATGGTTCGTCTATCATCGAAATGGCGCATCACATTAAAG
GTGGTTTTTTGCCTAATAATTTTGCTGAAAATAGCGCAGATCGTTCTTTTTTTCATTGTCATGCGAATCAGATTGCAGAT
GTTGTTGAACAAGTAGTTAAAAATGCCAGGGAGAAAGGTTTTCGTGCTAGAGATATCCAAGTCCTTGCACCGATGTATCG
CGGACCAGCTGGTATTAATGTGTTAAATCGCAATTTGCAAGAAATTTTTAACCCAAATGAATCAGGAAAGCGAAAAGAAA
TCGTATTTGGCGACATTAAATATCGTGTGCATGATAAAGTCTTGCAATTAATAAATCAGCCAGAAAAAAATGTGTTCAAT
GGGGATATTGGTGAAATCGTTTCACTAATGTACGCACGTGAAAATACTGAAAAACAAGATATGATTGTCGTGAAGTTCGA
TCAAACCGAAGTCACCTATTACCGGCAAGAATTCAATCAATTGACACATGCTTATTGCTGCTCGATTCATAAAGCGCAAG
GCAGTGAATTCCCGATTGTGATTATGCCAATTGTTCGTAGTTATTATCGCATGCTTAGGCGTGATTTGCTTTATACAGGA
GTAACAAGGAGCAAGCGCTTTTTGATTTTATGCGGCGAGGAAGACGCTTTTCGAATGGGTGTCGAAAGAACAGCTGAAAC
AAGTCGTAAAACAACATTATATGAACGTTTGCTCAGTGAAGAAGAACTCGAACAAATGAGTAACAAGAAAACACTCACTG
AAGAAAATATCTCCTCGATTGACCCAATGATTGGAATGGATGGGATTTCGCCTTATCAGTTTATGGAGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

AAA domain (AAA_30)

(347-555)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558

Multiple sequence alignment