Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FX000_RS09255 Genome accession   NZ_LR698983
Coordinates   1790351..1791130 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785351..1796130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS09235 trmFO 1786048..1787352 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FX000_RS09240 xerC 1787419..1788333 (+) 915 WP_003181750.1 tyrosine recombinase XerC -
  FX000_RS09245 hslV 1788347..1788892 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  FX000_RS09250 hslU 1788909..1790312 (+) 1404 WP_003181754.1 HslU--HslV peptidase ATPase subunit -
  FX000_RS09255 codY 1790351..1791130 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FX000_RS09260 flgB 1791484..1791873 (+) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  FX000_RS09265 flgC 1791873..1792325 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  FX000_RS09270 fliE 1792339..1792656 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  FX000_RS09275 fliF 1792707..1794308 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  FX000_RS09280 fliG 1794322..1795338 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  FX000_RS09285 fliH 1795322..1796089 (+) 768 WP_016885763.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=1128871 FX000_RS09255 WP_003181756.1 1790351..1791130(+) (codY) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1128871 FX000_RS09255 WP_003181756.1 1790351..1791130(+) (codY) [Bacillus licheniformis isolate MGYG-HGUT-02357]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment