Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FXZ10_RS09715 Genome accession   NZ_LR698965
Coordinates   1962492..1964837 (-) Length   781 a.a.
NCBI ID   WP_052651847.1    Uniprot ID   -
Organism   Planococcus massiliensis isolate MGYG-HGUT-01482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957492..1969837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXZ10_RS09695 dtd 1957629..1958069 (-) 441 WP_052651844.1 D-aminoacyl-tRNA deacylase -
  FXZ10_RS09700 - 1958079..1960271 (-) 2193 WP_052651845.1 RelA/SpoT family protein -
  FXZ10_RS09705 - 1960374..1961915 (-) 1542 WP_052654531.1 glycosyl hydrolase family 28-related protein -
  FXZ10_RS09710 - 1961989..1962501 (-) 513 WP_052651846.1 adenine phosphoribosyltransferase -
  FXZ10_RS09715 recJ 1962492..1964837 (-) 2346 WP_052651847.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FXZ10_RS09720 - 1964922..1965266 (-) 345 WP_052651848.1 lipopolysaccharide assembly LapA domain-containing protein -
  FXZ10_RS09725 secDF 1965347..1967623 (-) 2277 WP_052651849.1 protein translocase subunit SecDF -
  FXZ10_RS09730 - 1967689..1968009 (-) 321 WP_052651850.1 post-transcriptional regulator -
  FXZ10_RS09735 yajC 1968149..1968424 (-) 276 WP_052651851.1 preprotein translocase subunit YajC -
  FXZ10_RS09740 tgt 1968459..1969601 (-) 1143 WP_052651852.1 tRNA guanosine(34) transglycosylase Tgt -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 87764.56 Da        Isoelectric Point: 4.9276

>NTDB_id=1128716 FXZ10_RS09715 WP_052651847.1 1962492..1964837(-) (recJ) [Planococcus massiliensis isolate MGYG-HGUT-01482]
MIESKKRWRLTAPDEQIVEEIQKELSISSVLAKILVTRGLTSAEMAKRFMDLDPSGIHNPYLMKDMDIAVERIRQAIESQ
EKIMVYGDYDADGVTSTTVMMTVLEDLGADAIFKIPNRFKHGYGPNKELFQQAFDEGVKLIVTVDNGISGIEEVAFANEL
GMEVIISDHHDIGDTMPNALAIVHPRHPAGHYPFGELAGVGVAFKIAQALYEDVPDHLFELVAIGTIADLVPLHDENRLF
VKEGLSALQNSPRPAIEALAEVSGVKQREITEETIGFMFGPRINAIGRLQDADPAVKLFMTDDPGEARNLAGGLDVLNKE
RQAIVKKITDEAVAQVDQRYPDEPPHVIVVAQEGWNPGVVGIVASKLTEKYYRPSIVLSLSPETGKAKGSARSIEGFHLY
NELAANRDILPHFGGHPMAAGMTLQMAHVDELRERLNLQAKNSLTEEDLIPVVEIDIPVRLDEIDIETIESMRTLAPFGM
GFAKPKFFLEGVKVSSIRKIGAAQNHLKMELAQDSGTLDAVGFGIGSIGDELTPDVKIDVIGDLQINEWNGRKKPQLMVE
DVRTDQWQLFDIRGIRQVSRWSKLIPEKGQVFLAFKPETAAVFRTLIDEPIYSPETLNELEGPKHHLVLLDMPETEEQLA
IILSIFKPQRIYAHFYAKESQYFEQIPTREQFKWLFAFLKKRGSFDFKKHGDELAKHKGWSRDSIFFMLQVFFELGFVTL
NNGLTELAESPGKRDLSEAPIYKKREQQIALEQKLLYASYKDLKEWFDAKVSAKEEEQIWI

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=1128716 FXZ10_RS09715 WP_052651847.1 1962492..1964837(-) (recJ) [Planococcus massiliensis isolate MGYG-HGUT-01482]
ATGATTGAATCGAAAAAAAGATGGCGCTTGACCGCGCCTGATGAACAGATAGTAGAAGAAATTCAAAAAGAATTATCGAT
TTCGTCCGTCTTGGCGAAAATCTTAGTGACGCGCGGCCTGACGAGCGCGGAAATGGCCAAAAGATTTATGGACTTGGACC
CAAGCGGCATACATAATCCTTATTTGATGAAAGATATGGATATCGCTGTCGAGCGGATACGCCAAGCCATCGAATCACAG
GAGAAAATCATGGTATACGGCGATTACGATGCCGATGGAGTGACCAGCACGACAGTCATGATGACGGTTTTAGAAGATTT
AGGAGCGGACGCAATATTCAAGATTCCCAATCGGTTCAAGCATGGCTATGGGCCGAATAAAGAATTGTTCCAGCAAGCAT
TTGATGAAGGCGTCAAATTGATCGTCACAGTCGACAATGGCATTTCAGGCATCGAAGAAGTAGCGTTCGCCAATGAGTTA
GGCATGGAAGTCATCATCAGCGACCACCACGACATCGGAGACACGATGCCGAATGCACTCGCTATCGTCCATCCGCGCCA
TCCGGCAGGGCATTACCCTTTTGGCGAGCTGGCAGGAGTCGGGGTGGCTTTTAAAATTGCCCAGGCTTTATATGAAGATG
TGCCAGATCATTTGTTTGAGCTTGTTGCAATCGGCACCATCGCGGACTTAGTGCCGCTGCACGACGAGAACCGGCTATTC
GTAAAAGAAGGATTATCGGCGCTTCAAAATTCGCCGCGTCCCGCGATCGAAGCGTTGGCGGAAGTTTCCGGCGTCAAACA
GCGTGAAATTACGGAAGAGACGATTGGCTTTATGTTCGGCCCCCGCATCAACGCCATTGGACGCTTGCAGGATGCCGACC
CGGCAGTAAAACTCTTTATGACGGATGACCCGGGCGAAGCGCGGAACTTGGCAGGCGGCCTGGATGTGCTGAATAAAGAA
CGCCAGGCGATCGTAAAGAAAATTACTGATGAAGCTGTAGCCCAAGTGGATCAGCGTTATCCGGATGAGCCGCCGCATGT
CATCGTTGTGGCCCAGGAAGGATGGAATCCGGGAGTAGTCGGGATCGTTGCATCCAAACTGACGGAAAAATATTATCGTC
CGTCGATTGTCTTGTCGCTGAGTCCGGAAACCGGAAAAGCGAAAGGTTCGGCCCGCAGCATCGAAGGCTTCCATTTATAT
AACGAGCTTGCTGCTAACCGGGACATTTTGCCGCATTTCGGAGGACACCCGATGGCAGCGGGCATGACGCTCCAAATGGC
GCATGTGGATGAACTGCGGGAACGGTTGAATCTTCAAGCAAAAAACAGTTTGACAGAGGAAGATTTGATTCCGGTGGTGG
AAATTGACATTCCGGTTCGTCTGGATGAAATTGATATAGAGACGATCGAATCGATGCGCACACTTGCGCCTTTCGGGATG
GGCTTTGCGAAGCCGAAGTTTTTCTTGGAAGGCGTAAAGGTGTCGTCGATCCGGAAAATCGGCGCAGCCCAGAATCACCT
GAAGATGGAGCTCGCGCAAGATTCCGGAACGCTGGATGCGGTCGGCTTTGGCATCGGCTCGATTGGCGACGAATTGACGC
CGGATGTGAAAATCGATGTGATTGGCGACTTGCAGATCAATGAGTGGAACGGCCGAAAGAAACCGCAATTGATGGTGGAA
GATGTGCGGACTGACCAGTGGCAGTTATTTGATATCCGCGGCATCCGCCAGGTATCGCGCTGGTCAAAGCTGATTCCTGA
AAAAGGGCAAGTTTTTCTTGCTTTCAAGCCGGAGACCGCAGCAGTTTTCCGGACGCTCATCGATGAGCCGATCTACAGTC
CGGAAACCTTGAACGAACTGGAGGGGCCGAAGCATCATCTAGTGCTGCTCGATATGCCAGAGACGGAAGAGCAGTTAGCC
ATAATATTGTCGATTTTTAAACCGCAGCGGATTTATGCTCATTTCTACGCGAAGGAATCGCAGTATTTTGAGCAGATCCC
TACGCGCGAGCAATTCAAATGGCTGTTTGCGTTTCTTAAAAAGCGTGGATCATTCGATTTCAAAAAGCACGGCGATGAAT
TGGCGAAGCATAAAGGCTGGAGCCGGGACTCAATATTTTTCATGCTGCAGGTGTTTTTTGAACTCGGTTTTGTTACACTT
AACAATGGACTTACAGAGCTTGCTGAATCTCCAGGGAAACGTGATTTGTCGGAGGCGCCGATCTACAAGAAGCGGGAGCA
GCAGATTGCGTTGGAGCAGAAGCTATTGTATGCATCTTATAAAGACTTAAAAGAGTGGTTTGATGCGAAAGTATCAGCCA
AGGAGGAAGAACAGATATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(317-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-767)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.575

98.848

0.48

Multiple sequence alignment