Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FXZ10_RS09640 Genome accession   NZ_LR698965
Coordinates   1943587..1946067 (-) Length   826 a.a.
NCBI ID   WP_052651834.1    Uniprot ID   A0A098EMK3
Organism   Planococcus massiliensis isolate MGYG-HGUT-01482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1938587..1951067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXZ10_RS09620 - 1939392..1939700 (-) 309 WP_052651830.1 DUF1292 domain-containing protein -
  FXZ10_RS09625 ruvX 1939714..1940130 (-) 417 WP_052651831.1 Holliday junction resolvase RuvX -
  FXZ10_RS09630 - 1940132..1940398 (-) 267 WP_052651832.1 IreB family regulatory phosphoprotein -
  FXZ10_RS09635 alaS 1940488..1943112 (-) 2625 WP_052651833.1 alanine--tRNA ligase -
  FXZ10_RS09640 recD2 1943587..1946067 (-) 2481 WP_052651834.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FXZ10_RS09645 - 1946093..1946752 (-) 660 WP_052651835.1 tetratricopeptide repeat protein -
  FXZ10_RS09650 mnmA 1946767..1947882 (-) 1116 WP_052651836.1 tRNA 2-thiouridine(34) synthase MnmA -
  FXZ10_RS09655 - 1947897..1949030 (-) 1134 WP_052651837.1 cysteine desulfurase family protein -
  FXZ10_RS09660 cymR 1949044..1949460 (-) 417 WP_052651838.1 cysteine metabolism transcriptional regulator CymR -
  FXZ10_RS09665 - 1949594..1950883 (+) 1290 WP_052651839.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 826 a.a.        Molecular weight: 91935.47 Da        Isoelectric Point: 5.3199

>NTDB_id=1128715 FXZ10_RS09640 WP_052651834.1 1943587..1946067(-) (recD2) [Planococcus massiliensis isolate MGYG-HGUT-01482]
MTGQIDLFQEEVQFVLGRPVVSIFHNPQNLFSIAKVKIQQTNTSYTEKEIIVSGYFPKLSLEEQYRFTGSVKNHPKYGVQ
FQVETFTKEVPETEQGIVHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPEALDAVPRLSDEKKETIRSTLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIDVLTKNPFRLIEEIEGIGFQRADELGAKLGITGAHPDRIKASILHLLNQAS
LSEGHVYMDAKTLIPLVKEMLESSQRDEISIEAISKAMIELNEESKVAGGENRPYFPSLYYSEVGIATKLETLLGSQANR
DRFPASEVRRALGEAEERLGVNYAETQIQAIDGSINSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKDYAKKKEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKEEETEKEIEGRLIIIDEMSMVDTWLAHQLLKAVPDDAQIIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELKDIYRQTSGSSIIELAHQMKKGQLPADITAKTSDRSFIKAGADQIADVVEK
VVKSALSKGHSIKDIQVLAPMYRGPAGIDALNRMIQEMVNPNPDGKRKELVFGDITYRIGDKILQLVNQPESNVFNGDMG
EVIAILKAKETVEKQDMLVASFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
KDFLILCGDPQVFRYGVERTDDVQRMTTLKKRLQLSAEEPVQETETAEKALPVETVAAAKTELEMAEAKTAAPKTKGPAS
LTNENVHFIHPLVGMEGITPKDFMEV

Nucleotide


Download         Length: 2481 bp        

>NTDB_id=1128715 FXZ10_RS09640 WP_052651834.1 1943587..1946067(-) (recD2) [Planococcus massiliensis isolate MGYG-HGUT-01482]
ATGACCGGACAAATCGATTTATTCCAGGAAGAAGTGCAATTTGTACTGGGCAGGCCCGTCGTCTCGATTTTTCACAATCC
CCAGAATTTATTTTCCATCGCGAAAGTGAAAATCCAACAGACGAACACCTCCTATACTGAAAAAGAAATCATCGTATCCG
GCTATTTCCCGAAACTGTCGCTGGAAGAGCAGTACCGCTTTACGGGCTCGGTGAAAAACCATCCGAAATACGGCGTCCAA
TTCCAGGTGGAGACGTTTACGAAAGAAGTGCCGGAAACGGAACAGGGCATCGTCCATTATTTATCGAGCGATATGTTCAA
TGGCATCGGCCGGAAAACAGCGGAAACGATCGTCAAAAAACTCGGCAAAGACGCCATCAAAAAGATTTTGGAAGATCCGG
AAGCGCTGGACGCTGTACCGCGCCTTTCCGATGAGAAGAAAGAGACGATCCGCTCCACGCTGCAGATGAATCTCGGTTTG
GAGCGCGTGATGATCCAATTGAACGACTGGGGCTTCGGCCCGCAAGTCGGCATGCGGATTTATCAGGCGTACCGTGAAGA
AACGATTGACGTCCTGACGAAAAACCCGTTCCGGTTAATCGAAGAAATCGAAGGCATCGGTTTTCAGCGGGCGGATGAAC
TGGGTGCGAAACTCGGCATCACCGGCGCTCACCCGGACCGCATCAAAGCATCGATCCTGCATTTATTGAACCAGGCATCG
CTGTCGGAAGGGCACGTCTACATGGATGCGAAAACGCTGATTCCGCTCGTCAAAGAAATGCTGGAATCGAGCCAGCGCGA
TGAAATTTCCATCGAAGCGATTTCAAAAGCGATGATTGAGCTGAATGAAGAAAGCAAAGTGGCGGGGGGAGAAAACCGCC
CCTATTTTCCGTCGCTCTATTATTCGGAAGTCGGCATTGCGACGAAACTCGAAACGCTGCTCGGCTCCCAGGCAAACCGC
GACCGTTTCCCGGCATCCGAAGTACGGCGCGCCCTCGGTGAAGCGGAAGAGCGGCTCGGCGTAAATTATGCCGAAACGCA
AATCCAGGCGATTGACGGCAGCATCAACTCGTCGGTCATGATTTTGACCGGCGGCCCCGGCACCGGGAAGACGACCGTTG
TCCGCGGCTTGGTCGAAGTGTATGCGGAGCTTCACGGCTTGTCGCTTGATCCGAAAGACTACGCGAAGAAAAAAGAGCCG
TTTCCGATCATTCTCGCTGCACCGACAGGGCGCGCAGCAAAACGCCTGAGCGAATCGACGGAACTGCCGGCCATGACAAT
CCACCGGCTGCTCGGATTTAACGGCCAGGAAAAAGAAGAAGAGACGGAAAAAGAAATCGAAGGGCGTTTGATCATCATCG
ATGAAATGTCGATGGTCGATACGTGGCTAGCGCATCAATTGCTGAAAGCGGTGCCGGACGATGCCCAAATTATTTTCGTG
GGAGACCAGGATCAGCTGCCGCCGGTCGGCCCGGGCCAAGTGCTGCGCGATCTGCTCGAATCAAAACGGATTCCGACGGT
CGAATTGAAAGACATTTATCGCCAGACTTCCGGTTCGTCCATTATCGAACTCGCCCACCAAATGAAAAAAGGCCAATTGC
CGGCGGACATTACGGCTAAAACATCTGACCGGTCATTTATTAAAGCCGGTGCCGATCAAATTGCGGATGTTGTCGAGAAA
GTGGTCAAGAGCGCGTTGTCGAAAGGGCATTCCATCAAAGATATCCAAGTGCTGGCACCGATGTACCGGGGGCCGGCGGG
AATTGATGCCTTGAACCGCATGATCCAGGAAATGGTCAACCCGAATCCCGACGGCAAGCGGAAAGAACTCGTCTTCGGAG
ACATCACGTACCGGATCGGCGACAAGATTCTGCAGCTCGTGAACCAGCCCGAAAGCAATGTGTTCAACGGCGATATGGGT
GAAGTGATTGCAATTTTAAAAGCGAAAGAAACGGTGGAAAAGCAGGATATGCTCGTGGCATCATTTGATGGCATCGAAGT
GACGTACCAGCGAAGCGACTTGAACCAGTTGACGCTTGCGTATTGCTGTTCGATCCACAAATCGCAGGGATCGGAATTTC
CGACGGTCATCATGCCGGTCGTCCGCGGCTATATGAAAATGCTGCGGCGCAATCTTCTGTATACGGGCATCACTCGCAGC
AAAGACTTTTTGATTCTTTGCGGCGATCCGCAAGTGTTCCGCTACGGCGTTGAACGGACCGACGATGTGCAGCGCATGAC
AACATTGAAGAAGCGGCTGCAATTGTCTGCGGAAGAACCGGTCCAAGAAACAGAGACGGCTGAAAAAGCTTTACCAGTTG
AAACAGTAGCTGCCGCTAAAACGGAGCTTGAAATGGCCGAAGCTAAAACGGCTGCGCCAAAAACAAAAGGGCCGGCTAGC
CTCACCAATGAAAACGTCCATTTCATCCATCCGCTTGTCGGCATGGAAGGCATTACGCCGAAAGATTTTATGGAAGTATA
G

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098EMK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.457

99.153

0.54

Multiple sequence alignment