Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   FXY05_RS01090 Genome accession   NZ_LR698956
Coordinates   218348..218629 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori isolate MGYG-HGUT-01357     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 213348..223629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXY05_RS01065 groES 213926..214282 (-) 357 WP_000671946.1 co-chaperone GroES -
  FXY05_RS01075 dnaG 214557..216236 (+) 1680 WP_000601606.1 DNA primase -
  FXY05_RS01080 - 216233..217285 (+) 1053 WP_000721164.1 MnmA/TRMU family protein -
  FXY05_RS01085 - 217376..218203 (+) 828 WP_001154894.1 DUF5718 family protein -
  FXY05_RS01090 comB2 218348..218629 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  FXY05_RS01095 comB3 218629..218892 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  FXY05_RS01100 comB4 218894..221257 (+) 2364 WP_000890533.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  FXY05_RS01110 - 221488..222918 (+) 1431 WP_014534522.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=1128662 FXY05_RS01090 WP_001272686.1 218348..218629(+) (comB2) [Helicobacter pylori isolate MGYG-HGUT-01357]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=1128662 FXY05_RS01090 WP_001272686.1 218348..218629(+) (comB2) [Helicobacter pylori isolate MGYG-HGUT-01357]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAACTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment