Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FXZ20_RS13240 Genome accession   NZ_LR698953
Coordinates   2728475..2730313 (-) Length   612 a.a.
NCBI ID   WP_012578653.1    Uniprot ID   -
Organism   Bifidobacterium longum isolate MGYG-HGUT-01292     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2723475..2735313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXZ20_RS14365 - 2723960..2724337 (+) 378 WP_012578650.1 hypothetical protein -
  FXZ20_RS13220 rsmI 2724364..2725374 (-) 1011 WP_041982173.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FXZ20_RS13225 - 2725805..2726941 (+) 1137 WP_012577358.1 IS256-like element ISBlo17 family transposase -
  FXZ20_RS13235 - 2727298..2728323 (+) 1026 WP_012578652.1 FAD:protein FMN transferase -
  FXZ20_RS13240 rcrQ 2728475..2730313 (-) 1839 WP_012578653.1 ABC transporter ATP-binding protein Regulator
  FXZ20_RS13245 rcrP 2730381..2732252 (-) 1872 WP_012578654.1 ABC transporter ATP-binding protein Regulator
  FXZ20_RS13250 - 2732488..2733018 (-) 531 WP_012578655.1 MarR family winged helix-turn-helix transcriptional regulator -
  FXZ20_RS13255 - 2733172..2734695 (-) 1524 WP_012578656.1 amino acid permease -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 66960.39 Da        Isoelectric Point: 6.5046

>NTDB_id=1128620 FXZ20_RS13240 WP_012578653.1 2728475..2730313(-) (rcrQ) [Bifidobacterium longum isolate MGYG-HGUT-01292]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIVALILGAIGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMRS
VDFGAVGHIAWTLVALYAGYAVLGYVQSWMMANVTQRTAQRLRESISVKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKASQKYFARQQTALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFERYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALNGQIEFGVIVAFMMYIRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGTDHAGGRDVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMTHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=1128620 FXZ20_RS13240 WP_012578653.1 2728475..2730313(-) (rcrQ) [Bifidobacterium longum isolate MGYG-HGUT-01292]
ATGCCAAGAGGACCAATGGGCGGCAGGCGCGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCGTCGCACTCATCCTGGGCGCGATCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGCCTGCCCGCCATCGTCAACGGCAGGCCGGTGATGCGCTCG
GTCGATTTCGGCGCGGTGGGCCACATCGCCTGGACGCTGGTGGCCCTGTACGCGGGATATGCCGTGCTCGGCTATGTGCA
GAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGGCTGCGCGAATCGATCTCGGTCAAGATCAACCGGTTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATCACCTCGGCGACGTTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGGCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGACGGCTCTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCGTACAACGGCGAGGCGGATTCCATCCGCCGCTTCGAACGGTACAACGCGGACCTCTACGAGTCGGGTTGGAAGTCACA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCACTCAACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAAGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAGCGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGCAGGCCCTACTCGGCACGGACCATGCGGGCGGGCGCGACGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATCTCCGG
CGGCTCGATTGCGATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGAACCGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGTCTTGACCACTTCATCCGTTCGCTGCCGGACGGCTACGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGCACGTCG
TTCGTGATCGCCCATCGCCTCTCCACGATCCGTGACGCCGACATGATCCTCGTCATGACCCACGGCGATGTGATCGAACG
CGGCACCCATGACGAGCTGCTGGCTGCGGGCGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.082

96.078

0.52

Multiple sequence alignment