Detailed information NTG1128502

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: FQT45_RS09365
• Genome accession: NZ_LR595858
• Coordinates: 1897029..1897964 (-)
• Length: 311 a.a.
• NCBI ID: WP_143880468.1
• Uniprot ID: A0A4U9YDU9
• Organism: Streptococcus pseudoporcinus strain NCTC10228
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1892029..1902964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FQT45_RS09340 (NCTC10228_01928)	tsaD	1892521..1893531 (-)	1011	WP_077322548.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
FQT45_RS09345 (NCTC10228_01929)	rimI	1893521..1893949 (-)	429	WP_007892326.1	ribosomal protein S18-alanine N-acetyltransferase	-
FQT45_RS09350 (NCTC10228_01930)	tsaB	1893949..1894641 (-)	693	WP_077322549.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
FQT45_RS09355 (NCTC10228_01931)	-	1894919..1895149 (+)	231	WP_077322550.1	DNA-dependent RNA polymerase subunit epsilon	-
FQT45_RS09360 (NCTC10228_01932)	rnjA	1895151..1896836 (+)	1686	WP_143880467.1	ribonuclease J1	-
FQT45_RS09365 (NCTC10228_01933)	amiF	1897029..1897964 (-)	936	WP_143880468.1	ABC transporter ATP-binding protein	Regulator
FQT45_RS09370 (NCTC10228_01934)	oppD	1897964..1899010 (-)	1047	WP_077322555.1	ABC transporter ATP-binding protein	Regulator
FQT45_RS09375 (NCTC10228_01935)	-	1899021..1900052 (-)	1032	WP_077322556.1	ABC transporter permease	-
FQT45_RS09380 (NCTC10228_01936)	-	1900062..1900976 (-)	915	WP_077322557.1	ABC transporter permease	-
FQT45_RS09385 (NCTC10228_01937)	-	1901048..1902706 (-)	1659	WP_077322558.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35424.38 Da
• Isoelectric Point: 6.2508

>NTDB_id=1128502 FQT45_RS09365 WP_143880468.1 1897029..1897964(-) (amiF) [Streptococcus pseudoporcinus strain NCTC10228]
MTEERKKLVELKDVSLIFNKGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGDIIFNGKTISNL
KGKDLHEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLSPNKAEREERVQELLERVGLNRDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQRLQEERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTRSLLSAIPEPDPDIERQRVAEIYDPSIEMDGQERRMHEITPGHFVLSTEAEAEAYRAQQRK

Nucleotide

• Length: 936 bp

>NTDB_id=1128502 FQT45_RS09365 WP_143880468.1 1897029..1897964(-) (amiF) [Streptococcus pseudoporcinus strain NCTC10228]
ATGACAGAAGAACGTAAAAAATTAGTTGAGCTTAAGGATGTTTCACTGATCTTCAATAAGGGTAAAAAGAATGAAGTTAA
GGCTATTGACAATATCAGCTTTGATATCTATGAAGGTGAAGTCTTTGGTCTTGTCGGAGAATCCGGATCAGGAAAGACGA
CAGTTGGCCGTGCTATTTTGAAGCTTTATGATATCAATGAAGGTGATATTATCTTTAATGGCAAAACGATTTCAAATCTT
AAAGGTAAAGACTTACATGAGTTCCGTAAAGATGCCCAGATGATTTTCCAAGATCCACAAGCAAGTCTTAATGGGCGGAT
GAAAATTAGAGACATTGTTGCAGAAGGTCTAGATATTCATAAACTTTCACCAAACAAAGCAGAGCGTGAAGAACGGGTCC
AGGAATTACTTGAACGTGTTGGCTTGAACCGCGACCATGTCACACGTTACCCTCATGAATTTTCTGGCGGTCAACGTCAA
CGGATTGGTATTGCAAGAGCTTTGGCTGTTAAACCTAAGTTCATCATTGCTGACGAGCCAATATCTGCTCTAGACGTCTC
CATTCAAGCACAGGTTGTTAACTTAATGCAACGATTACAAGAAGAAAGAGGTTTGACTTATCTCTTTATTGCTCATGATT
TGTCAATGGTTAAATATATTTCTGATCGTATTGGTGTTATGCATTGGGGTAAGATGTTAGAGATTGGAACTTCTGATGAT
GTTTACAATAACCCTATTCATCCCTACACTAGGAGCCTCCTCTCTGCTATCCCAGAACCAGATCCTGATATTGAGCGTCA
ACGGGTTGCTGAAATTTACGATCCAAGTATCGAAATGGACGGACAAGAACGTCGTATGCATGAAATTACGCCAGGTCACT
TTGTTTTATCGACCGAAGCAGAAGCAGAAGCATATAGAGCTCAACAAAGAAAGTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

3D structure

• AlphaFold DB: A0A4U9YDU9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	53.871	99.678	0.537
amiF	Streptococcus thermophilus LMD-9	53.548	99.678	0.534
amiF	Streptococcus salivarius strain HSISS4	53.548	99.678	0.534